View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11858_low_17 (Length: 256)
Name: NF11858_low_17
Description: NF11858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11858_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 30 - 239
Target Start/End: Original strand, 11493041 - 11493250
Alignment:
| Q |
30 |
aatttaaatcatgatttaactattcacatttgaatattaacaaagtctttctgtatatttattttacatgtaccattttcacaacttagatcactataaa |
129 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11493041 |
aatttaaatcatgatttaactattcacatttgaatatcaacaaagtctttctgtatatttattttacatgtaccattttcacaacttagatcactataaa |
11493140 |
T |
|
| Q |
130 |
tataatataaatcaaagaaagtatagtaatatgatatgatgaatttacatttgagacttaatcccagcaaaatctctaacagtataaccaaccttttcaa |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11493141 |
tataatataaatcaaagaaagtatagtaatatgatatgatgaatttacatttgagacttaatcccagcaaaatctctaacagtataaccaaccttttcaa |
11493240 |
T |
|
| Q |
230 |
atcttcctct |
239 |
Q |
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|||||||||| |
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| T |
11493241 |
atcttcctct |
11493250 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 29291147 - 29291095
Alignment:
| Q |
187 |
ttaatcccagcaaaatctctaacagtataaccaaccttttcaaatcttcctct |
239 |
Q |
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|||||||||||||||||| ||||||| ||||||| |||||||| |||||||| |
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| T |
29291147 |
ttaatcccagcaaaatctttaacagtgaaaccaactttttcaaaccttcctct |
29291095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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