View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11858_low_2 (Length: 850)

Name: NF11858_low_2
Description: NF11858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11858_low_2
NF11858_low_2
[»] chr2 (8 HSPs)
chr2 (1-839)||(21433681-21434520)
chr2 (596-839)||(27152651-27152895)
chr2 (715-831)||(27075494-27075610)
chr2 (9-155)||(27153196-27153337)
chr2 (748-831)||(27028509-27028592)
chr2 (467-532)||(27152991-27153055)
chr2 (70-153)||(26990180-26990263)
chr2 (760-827)||(26989694-26989761)
[»] chr6 (2 HSPs)
chr6 (70-153)||(34692242-34692325)
chr6 (760-827)||(34691769-34691836)


Alignment Details
Target: chr2 (Bit Score: 788; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 788; E-Value: 0
Query Start/End: Original strand, 1 - 839
Target Start/End: Complemental strand, 21434520 - 21433681
Alignment:
Q  1 atgcatccgccatacctacaacatttgttagcaacattttcatacattttctataaaa-gtggcgacttctgaatcattaagtggatatatatttagcac 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21434520 atgcatccgccatacctacaacatttgttagcaacattttcatacattttctataaaaagtggcgacttctgaatcattaagtggatatatatttagcac 21434421  T
Q  100 atttgaaactatgagcttggaatatagagaataaactttagaggaatggttcattaaaacaccaagtttaccaataatcaggaaaaaccctcactaataa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21434420 atttgaaactatgagcttggaatatagagaataaactttagaggaatggttcattaaaacaccaagtttaccaataatcaggaaaaaccctcactaataa 21434321  T
Q  200 tccaagatggtagtcttttataagctttaataaatagatcaattatgatttttatagtcccttgggcacaaactcatgttagaccaaaagagcgatttta 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21434320 tccaagatggtagtcttttataagctttaataaatagatcaattatgatttttatagtcccttgggcacaaactcattttagaccaaaagagcgatttta 21434221  T
Q  300 gaatgagatatttgaaggatgctattaatgagttgtatttataacttactagccgattttgtaggatcgtatcatttggttgtttaannnnnnnnaataa 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||        |||||    
T  21434220 gaatgagatatttgaaggatgctattaatgagttgtatttataacttactagccgattttgtaggatcatatcatttggttgtttaattttttttaataa 21434121  T
Q  400 agtagttttttcccaagtttatttgtgctctaaccaatgaagaatgctagcaatactcttttttccgggaacatgagtgttgaaaagaggtgcattaata 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21434120 agtagttttttcccaagtttatttgtgctctaaccaatgaagaatgctagcaatactcttttttccgggaacatgagtgttgaaaagaggtgcattaata 21434021  T
Q  500 tccctgttccaaatcaattttactttgcaatgattatggagctgttagttcaaacttccaatgatagggcaccaaatcagttttacatttgcatttcata 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21434020 tccctgttccaaatcaattttactttgcaatgattatggagctgttagttcaaacttccaatgatagggcaccaaatcagttttacatttgcatttcata 21433921  T
Q  600 tgactatagagttctttgattcatattatacaactgtgtttaatttgtcaatttgtataggtaaaaagaagtatattttgaaattgttcatagattaact 699  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21433920 tgactatagagttctttgattcatattatacaattgtgtttaatttgtccatttgtataggtaaaaagaagtatattttgaaattgttcatagattaact 21433821  T
Q  700 atcactacactaaccattccaattacataattcagaaaaaacaagtcagaaactagcagcgcactcacctttttattatcatcaagaattaggatagaac 799  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21433820 accactacactaaccattccaattacataattcagaaaaaacaagtcagaaactagcagcgcactcacctttttattatcatcaagaattaggatagaac 21433721  T
Q  800 tttctgtccccaacacaagattcagatccttctccttcat 839  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21433720 tttctgtccccaacacaagattcagatccttctccttcat 21433681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 596 - 839
Target Start/End: Complemental strand, 27152895 - 27152651
Alignment:
Q  596 catatgactatagagttctttgattcatattatacaactgtgtttaatttgtcaatttgtataggtaaaaagaagtatattttgaaattgt-----tcat 690  Q
    ||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||  |||||||||||||||  || |||||| ||| |     ||||    
T  27152895 catatgattatagcgttctttgattcatattatacaattgtgtttagtttgttaattcatataggtaaaaagaaaaatgttttgagattttcatcctcat 27152796  T
Q  691 agattaactatcactacactaaccattccaattacataattcagaaaaaacaagtcagaaactagcagcgcactcacct-ttttattatcatcaagaatt 789  Q
    |||||||||||||| |     ||||||||||||| |||||||||||||||| | |||||||||||||| |||||||||| |||| |||||||||||||||    
T  27152795 agattaactatcacga-----accattccaattagataattcagaaaaaaccaatcagaaactagcagtgcactcacctttttttttatcatcaagaatt 27152701  T
Q  790 aggatagaactttctgtccccaacacaagattcagatccttctccttcat 839  Q
    |  ||   ||||| |||||||||||||| |||||||||||||| ||||||    
T  27152700 attattacactttttgtccccaacacaacattcagatccttctgcttcat 27152651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 715 - 831
Target Start/End: Original strand, 27075494 - 27075610
Alignment:
Q  715 attccaattacataattcagaaaaaacaagtcagaaactagcagcgcactcacctttttattatcatcaagaattaggatagaactttctgtccccaaca 814  Q
    |||| ||||| | ||||| | ||||||||||||||||||||||| |||||||||| ||  |||||||||||||||| ||||||| |||||||||||||||    
T  27075494 attctaattaaacaattccgcaaaaacaagtcagaaactagcagtgcactcacctcttctttatcatcaagaattaagatagaattttctgtccccaaca 27075593  T
Q  815 caagattcagatccttc 831  Q
    |||||| ||||||||||    
T  27075594 caagatccagatccttc 27075610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 27153337 - 27153196
Alignment:
Q  9 gccatacctacaacatttgttagcaacattttcatacattttctataaaag-tggcgacttctgaatca----ttaagtggatatatatttagcacattt 103  Q
    ||||||||||||||||||||||||||||||||||          ||||||| | | |||||||||||||    ||||||||||| || ||||||||||||    
T  27153337 gccatacctacaacatttgttagcaacattttca----------ataaaaggtagtgacttctgaatcattaattaagtggatagatctttagcacattt 27153248  T
Q  104 gaaactatgagcttggaatatagagaataaactttagaggaatggttcatta 155  Q
    ||||||||||||| || || ||||||||||||||||||||||||||||||||    
T  27153247 gaaactatgagctgggtatttagagaataaactttagaggaatggttcatta 27153196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 748 - 831
Target Start/End: Complemental strand, 27028592 - 27028509
Alignment:
Q  748 gaaactagcagcgcactcacctttttattatcatcaagaattaggatagaactttctgtccccaacacaagattcagatccttc 831  Q
    ||||||||||| |||||||||| ||  |||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  27028592 gaaactagcagtgcactcacctcttctttatcatcaagaattaagatagaattttctgtccccaacacaagatccagatccttc 27028509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 27153055 - 27152991
Alignment:
Q  467 ggaacatgagtgttgaaaagaggtgcattaatatccctgttccaaatcaattttactttgcaatga 532  Q
    |||| |||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||    
T  27153055 ggaaaatgagtgttgaaaagaggtgcattaatatctcggttccaaatcaa-tttactttgcaatga 27152991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 153
Target Start/End: Complemental strand, 26990263 - 26990180
Alignment:
Q  70 tgaatcattaagtggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactttagaggaatggttcat 153  Q
    ||||||||||| |||||| || ||| ||||||||||| |||||| ||| |  |||||||||||||||||||||||||| |||||    
T  26990263 tgaatcattaaatggatagatcttttgcacatttgaatctatgaactttgtctatagagaataaactttagaggaatgattcat 26990180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 760 - 827
Target Start/End: Complemental strand, 26989761 - 26989694
Alignment:
Q  760 gcactcacctttttattatcatcaagaattaggatagaactttctgtccccaacacaagattcagatc 827  Q
    |||||||||| ||  || ||||||||||||| ||||||| ||||||||||||||||||||| ||||||    
T  26989761 gcactcacctcttctttgtcatcaagaattatgatagaattttctgtccccaacacaagatccagatc 26989694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 153
Target Start/End: Complemental strand, 34692325 - 34692242
Alignment:
Q  70 tgaatcattaagtggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactttagaggaatggttcat 153  Q
    ||||||||||| |||||| || ||| ||||||||||| |||||| ||| |  |||||||||||||||||||||||||| |||||    
T  34692325 tgaatcattaaatggatagatcttttgcacatttgaatctatgaactttgtctatagagaataaactttagaggaatgattcat 34692242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 760 - 827
Target Start/End: Complemental strand, 34691836 - 34691769
Alignment:
Q  760 gcactcacctttttattatcatcaagaattaggatagaactttctgtccccaacacaagattcagatc 827  Q
    |||||||||| ||  || ||||||||||||| ||||||| ||||||||||||||||||||| ||||||    
T  34691836 gcactcacctcttctttgtcatcaagaattacgatagaattttctgtccccaacacaagatccagatc 34691769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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