View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11858_low_21 (Length: 226)
Name: NF11858_low_21
Description: NF11858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11858_low_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 27903758 - 27903564
Alignment:
| Q |
13 |
cagagactaagaacaaatcaacaaagcaagcgaagaaagagtaaagaataagacctgattaaagaggaagtcaatgtgaaaccacaaaagctgtttaaca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27903758 |
cagagactaagaacaaatcaacaaagcaagcgaagaaagagtaaagaataagacctgattaaagaggaagtcaatgtgaaaccacaaaagctgtttaaca |
27903659 |
T |
|
| Q |
113 |
ccaattcaacttaatatgtataaacagaatttggaagtgcatgtgtgtgtttggaagtgtagtgatagtgaaggtgaagactcacaagtcaatct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27903658 |
ccaattcaacttaatatgtataaacagaatttggaagtgcatgtgtgtgtttggaagtgtagtgatagtgaaggtgaagactcacaagtcaatct |
27903564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 28010522 - 28010445
Alignment:
| Q |
50 |
agagtaaagaataagacctgattaaagaggaagtcaatgtg-aaaccacaaaagctgtttaacaccaattcaacttaa |
126 |
Q |
| |
|
|||||| ||||||| |||| |||||||||||| |||| ||| ||||| ||||||| ||| |||||||||||||||| |
|
|
| T |
28010522 |
agagtagagaataaaacctaattaaagaggaactcaaagtgaaaaccctaaaagctattttgcaccaattcaacttaa |
28010445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University