View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11858_low_24 (Length: 202)
Name: NF11858_low_24
Description: NF11858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11858_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 26617164 - 26616993
Alignment:
| Q |
14 |
caaaggtcaaataaaactagtggtgatcacaaattgcaacctagatagggtccattaaatttaagtccctcatataatgaatgtcatgattggaagggga |
113 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
26617164 |
caaaggtcaaataaaactagtggtaatcacaaattgcaacctagatggggtccattaaatt-aagtccctcatataatgtatgtcatgattggaagggaa |
26617066 |
T |
|
| Q |
114 |
acccttccctaccttggaatgaactttcttctggaccatgacagtctgatatatctctagtacagtttttctt |
186 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26617065 |
acccctccctaccttcgaatgaactttcttctggaccatgacagtctgatatatctctagtacagtttttctt |
26616993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 26609968 - 26609816
Alignment:
| Q |
14 |
caaaggtcaaataaaactagtggtgatcacaaattgcaacctagatagggtccattaaatttaagtccctcatataatgaatgtcatgattggaagggga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
26609968 |
caaaggtcaaataaaactagtggtgatcacaaattgcaacctagatagggtccattaaatttaagtccctcatataatgtatgtcatgattggaaggaga |
26609869 |
T |
|
| Q |
114 |
acccttccctaccttggaatgaactttcttctggaccatgacagtctgatata |
166 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26609868 |
acccttccctaccttcgaatgaactttcttctggaccatgacaatctgatata |
26609816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 26652275 - 26652446
Alignment:
| Q |
14 |
caaaggtcaaataaaactagtggtgatcacaaattgcaacctagatagggtccattaaatttaagtccctcatataatgaatgtcatgattggaagggga |
113 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26652275 |
caaaggtcaaataaaactagtggagatcacaaattgcagcctaggtagggtccattaaatt-aagtccctcatataatgtatgtcatgattggaagggga |
26652373 |
T |
|
| Q |
114 |
acccttccctaccttggaatgaactttcttctggaccatgacagtctgatatatctctagtacagtttttctt |
186 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
26652374 |
acccttccctaccttcgaatgaactttcttctggaccatgacaatctgatatatatctagtacagtttttctt |
26652446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 26622567 - 26622426
Alignment:
| Q |
14 |
caaaggtcaaataaaactagtggtgatcacaaattgcaacctagatagggtccattaaatttaagtccctcatataatgaatgtcatgattggaagggga |
113 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
26622567 |
caaaggtcaaataaaactagtggcgatcacaaattgcaacctagatagggtccattaaatt-aagtccctcatataatgtatgtcatgatttgaagggga |
26622469 |
T |
|
| Q |
114 |
acccttccctaccttggaatgaactttcttctggaccatgaca |
156 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26622468 |
acccttccctaccttcgaatgaactttcttctggaccatgaca |
26622426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 57 - 186
Target Start/End: Complemental strand, 26640515 - 26640387
Alignment:
| Q |
57 |
gatagggtccattaaatttaagtccctcatataatgaatgtcatgattggaaggggaacccttccctaccttggaatgaactttcttctggaccatgaca |
156 |
Q |
| |
|
||||||||||||| | |||| ||||||||| | || || |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26640515 |
gatagggtccattctaattaaatccctcata-attgtctgccatgattggaagggaaacccttccctaccttggaatgatctttcttctggaccatgaca |
26640417 |
T |
|
| Q |
157 |
gtctgatatatctctagtacagtttttctt |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
26640416 |
gtctgatatatctctagtacagtttttctt |
26640387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 26632688 - 26632532
Alignment:
| Q |
11 |
aagcaaaggtcaaataaaactagtggtgatcacaaattgcaacc-tagatagggtccattaaatttaagtccctcatataatgaatgtcatgattggaag |
109 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| | |||| ||||||||| | || || ||||||||||| |
|
|
| T |
26632688 |
aagcaaaggtcaaataaaactagtgctgatcacaaattgcaaccatagatagggtccattctaattaaatccctcata-attgtctgcgatgattggaag |
26632590 |
T |
|
| Q |
110 |
gggaacccttccctaccttggaatgaactttcttctggaccatgacagtctgatatat |
167 |
Q |
| |
|
|| |||| ||||||||||| || ||| |||||||||||| |||||||||||||||||| |
|
|
| T |
26632589 |
ggaaaccgttccctaccttcgactgatctttcttctggaacatgacagtctgatatat |
26632532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University