View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11858_low_3 (Length: 519)
Name: NF11858_low_3
Description: NF11858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11858_low_3 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 18 - 519
Target Start/End: Original strand, 155317 - 155819
Alignment:
| Q |
18 |
gtgtgggttggtgttgaggtctcatcttttggtgcttctcaagcacaagacattgttcactagggagagggtgatgacagggtctactatagtgaacaag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
155317 |
gtgtgggttggtgttgaggtctcatctttgggtgcttctcaagcacaagacattgttcactagggagagggtgatgacagggtctactattgtgaacaag |
155416 |
T |
|
| Q |
118 |
gttaaggcaagggattttgcaaaaccaggtttgggaagagggataagggtggaggatttggacatttcacaagaggagatggaaatgtatgttgatcttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
155417 |
gttaaggcaagggattttgcaaaaccaggtttgggaagagggataagggtggaggatttggacatttcacaagaggagatggaaatgtatgttgatcttc |
155516 |
T |
|
| Q |
218 |
atccaatcacaaatacttctccatatactgttgttgaaacaatgtctcttgcaaaagctgctcttctgtttcgggagcttggactcaggcatttgctagt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
155517 |
atccaatcacaaatacttctccatatactgttgttgaaacaatgtctcttgcaaaagctgctcttctgtttcgggagcttggactcaggcatttgctagt |
155616 |
T |
|
| Q |
318 |
tgtgcctaagaaaccaggagtaagt-aaatactcttacttttatttatttgtgttgttgttaattagagttgaatgatgaattacctttattattataac |
416 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
155617 |
tgtgcctaagaaaccaggagtaagtaaaatactcttacttttatttatttgtgttgttgttaattagagttgaatgatgaattacctttattattataac |
155716 |
T |
|
| Q |
417 |
taatatttataaatgttaaacattatgcagaggcctccaattgttgggatactgacaaggcatgatttcatgcacgactatatcttgtgcctgttcccaa |
516 |
Q |
| |
|
|||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
155717 |
taatatttgtaaatgttaaacaatgtgcagaggcctccaattgttgggatactgacaaggcatgatttcatgcacgactatatcttgggcctattcccaa |
155816 |
T |
|
| Q |
517 |
act |
519 |
Q |
| |
|
||| |
|
|
| T |
155817 |
act |
155819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 284
Target Start/End: Complemental strand, 24328867 - 24328780
Alignment:
| Q |
197 |
tggaaatgtatgttgatcttcatccaatcacaaatacttctccatatactgttgttgaaacaatgtctcttgcaaaagctgctcttct |
284 |
Q |
| |
|
|||| ||||||||||||||||||||||| || ||||| || || || ||||| ||||| || ||||| ||||| ||||| ||| |||| |
|
|
| T |
24328867 |
tggatatgtatgttgatcttcatccaataactaatacatcgccgtacactgtagttgagactatgtcacttgctaaagccgctattct |
24328780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 341
Target Start/End: Complemental strand, 56469020 - 56468920
Alignment:
| Q |
241 |
tatactgttgttgaaacaatgtctcttgcaaaagctgctcttctgtttcgggagcttggactcaggcatttgctagttgtgcctaagaaaccaggagtaa |
340 |
Q |
| |
|
||||| ||||| |||||||||||||| || ||| |||| |||| || || |||||||| |||||||||||| | || ||||| |||| | | ||||||| |
|
|
| T |
56469020 |
tatacagttgtggaaacaatgtctctagctaaaactgcagttcttttccgtgagcttggcctcaggcatttgttggtggtgccaaagacatccggagtaa |
56468921 |
T |
|
| Q |
341 |
g |
341 |
Q |
| |
|
| |
|
|
| T |
56468920 |
g |
56468920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University