View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11858_low_4 (Length: 501)
Name: NF11858_low_4
Description: NF11858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11858_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 156572 - 156353
Alignment:
| Q |
14 |
cacagatggatcctgtagagatggtggtcatattggttgtggtggcatcattagaggaagcaatggtgagtggttgtgaggtttctccaagtatattgaa |
113 |
Q |
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| T |
156572 |
cacagatggatcctgtagagatggtggtcatattggttgtggtggcatcattagaggaagcaatggtgagtggttgtgaggtttctccaagtatattgaa |
156473 |
T |
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| Q |
114 |
gtatattggaatagaaggtgcttatttggcagaattgtggggagtgttggaagggctcatgtatgccagaaggttgcaatttcgatttattgaggtgcat |
213 |
Q |
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| T |
156472 |
gtatattggaatagaaggtgcttatttggcagaattgtggggagtgttggaagggcacatgtatgccagaaggttgcaatttcgatttattgaggtgcat |
156373 |
T |
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| Q |
214 |
gttgactccttagttgttgt |
233 |
Q |
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| T |
156372 |
gttgactccttagttgttgt |
156353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 247 - 333
Target Start/End: Complemental strand, 156217 - 156131
Alignment:
| Q |
247 |
catacgcttttagctaactatgattgttcgatggattcggggatctgattctttgatgtatgtcctagcaatattagtcttttattg |
333 |
Q |
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| T |
156217 |
catacgcttttagctaactatgattgttcgatggattcggggatctgattctttgatgtatgtcatagcaatattagtcttctattg |
156131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 439 - 501
Target Start/End: Complemental strand, 155964 - 155902
Alignment:
| Q |
439 |
atgatgtgaatatatattcctattactttctcggtaaatatctagtttggtatcttgtataat |
501 |
Q |
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| T |
155964 |
atgatgtgaatatatattcctattactttctcggtaaagatctagattggtctcttgtataat |
155902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 333 - 374
Target Start/End: Complemental strand, 156089 - 156048
Alignment:
| Q |
333 |
gttgtaatctctttctttttgggcttaggccctcatcgatat |
374 |
Q |
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| T |
156089 |
gttgtaatctctttctttttgggcttaggccctcatcgatat |
156048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 31976695 - 31976581
Alignment:
| Q |
119 |
ttggaatagaaggtgcttatttggcagaattgtggggagtgttggaagggctcatgtatgccagaaggttgcaatttcgatttattgaggtgcatgttga |
218 |
Q |
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| T |
31976695 |
ttggaataggagatgtttatctggcagaattatgtggagtgttggaagggctcatgtatgtcagaaggttgtaatttcgatttattgagttacatgttga |
31976596 |
T |
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| Q |
219 |
ctccttagttgttgt |
233 |
Q |
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| T |
31976595 |
cttcttacttgttgt |
31976581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 37054140 - 37054066
Alignment:
| Q |
160 |
ttggaagggctcatgta-tgccagaaggttgcaatttcgatttattgaggtgcatgttgactccttagttgttgt |
233 |
Q |
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| T |
37054140 |
ttggaaggggtcatgtaatgttagaaggttgcaattttgatttattgagttgcatgttgactccttagttattgt |
37054066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 31976445 - 31976373
Alignment:
| Q |
255 |
tttagctaactatgattgttcgatggattcggggatctgattctttgatgtatgtcctagcaatattagtctt |
327 |
Q |
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| T |
31976445 |
tttagctaattataattgttcgatggagtcagggatatgtttttttgatgtatgtcgtagtaatattagtctt |
31976373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 31976343 - 31976306
Alignment:
| Q |
333 |
gttgtaatctctttctttttgggcttaggccctcatcg |
370 |
Q |
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| T |
31976343 |
gttgtaatctctttctttttgggcttagactctcatcg |
31976306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 2909370 - 2909283
Alignment:
| Q |
138 |
tttggcagaattgtggggagtgttggaagggctcatgtatgccagaaggttgcaatttcgatttattgaggtgcatgttgactcctta |
225 |
Q |
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| T |
2909370 |
tttggtagaattatggggagtgttggaagatctcatgtatgctagaaggttgcaattttggtttattgagttgcatgttgactcctta |
2909283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 2909135 - 2909069
Alignment:
| Q |
259 |
gctaactatgattgttcgatggattcggggatctgattctttgatgtatgtcctagcaatattagtct |
326 |
Q |
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| T |
2909135 |
gctaactatggttgttcgatggatttgggggtctg-ttttttgatgtctatcctagcaatattagtct |
2909069 |
T |
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