View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11858_low_5 (Length: 404)
Name: NF11858_low_5
Description: NF11858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11858_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 32764537 - 32764927
Alignment:
| Q |
1 |
gttgtaacaaacgtgctcaatgtaagtacaaacctgtacgaaggaggacttttgggccacatctcaaaattcaccttagaatgaggagacatgagatgaa |
100 |
Q |
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| T |
32764537 |
gttgtaacaaacgtgctcaatgtaagtacaaacctgtacgaaggaggacttttgggccacatctcaaaattcaacttagaatgaggagacatgagatgaa |
32764636 |
T |
|
| Q |
101 |
aataataatcaacccactcaaccttttgttccaggttcttggtcatctttgttccatagccatcaaatttaccactagatggatcatttgcatatgtctc |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32764637 |
aataataatcaacccactcaaccttttgttcaaggttcttggtcatctttgttccatagccatcaaatttaccactagatggatcatttgcatatgtctc |
32764736 |
T |
|
| Q |
201 |
tttctccttttgagggagagnnnnnnnctcctggcccacatcttgcaaactttgaataagtttttgagatataccatggtcagtgatcacaaagaaaccc |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32764737 |
tttctccttttgagggagagaaaaaaactcctggcccacatcttgcaaactttgaataagtttttgagatataccatggtcagtgatcacaaagaaaccc |
32764836 |
T |
|
| Q |
301 |
cactcagaagcagcttcattgattttcttcactaaaaggttatgtggttgagacaatgaaatcataggcacagtaacaccctccatggcct |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32764837 |
cactcagaagcagcttcattgattttcttcactaaaaggttatgtggttgagacaatgaaatcataggcacagtaacaccctccatggcct |
32764927 |
T |
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