View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11858_low_7 (Length: 393)
Name: NF11858_low_7
Description: NF11858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11858_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 12187983 - 12188366
Alignment:
| Q |
1 |
ccttctcaactcgaacgctaccgatcaagatcatgtaatatatggacnnnnnnnnnnnnnnnatttctaattggtattgcaa-tatgaataataacaata |
99 |
Q |
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| T |
12187983 |
ccttctcaactcgaacgctaccgatcaagatcatgtaatatatggacttttttcttt-----atttctaattggtattgcaaatataaataataacaata |
12188077 |
T |
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| Q |
100 |
ttgttaaaaatgatatccacttactaataatagtcactcgagaatgatcactatacggtcaaataaagaagaaaaataagaatgaaattataa---atct |
196 |
Q |
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| T |
12188078 |
ttgttaaaaatgatatccacttactaataatagtcactcgagaatgatcactatacggtcaaacaaagaagaaaaataagaatgaaattattatataact |
12188177 |
T |
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| Q |
197 |
taatgtcaacgaaggaatttaatgttttttgtactatttcttcctcatcttgcctataaatacataactttcagacacttcattttcatcgatcaataca |
296 |
Q |
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| T |
12188178 |
ttatgtcaacgaaggaatttaatgttttttgttctatttctttctcatgttacctataaatacataactttcagacacttcattttcatcgatcaataca |
12188277 |
T |
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| Q |
297 |
atagtttcatgatgagttataagaaaatgaattccaaggggttactttttctaacaatgttgctggcttccatccttctcatctctgct |
385 |
Q |
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| T |
12188278 |
atagtttcacaataagctataagaaaatgaattccaaagggttactttttcttactatgttgctggcttccatccttctcatctctgct |
12188366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 195 - 385
Target Start/End: Original strand, 12182171 - 12182361
Alignment:
| Q |
195 |
cttaatgtcaacgaaggaatttaatgttttttgtactatttcttcctcatcttgcctataaatacataactttcagacacttcattttcatcgatcaata |
294 |
Q |
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| T |
12182171 |
cttaatgtcaacgaaggaatttaatgttttttgttctatttctttctcatgttgcctataaatacataactttcagacacttcattttcatcgatcaata |
12182270 |
T |
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| Q |
295 |
caatagtttcatgatgagttataagaaaatgaattccaaggggttactttttctaacaatgttgctggcttccatccttctcatctctgct |
385 |
Q |
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| T |
12182271 |
caatagtttcacgataagctataacaaaatgaattccaaagggttactttttcttactatgttgctggcttccatccttctcatctctgct |
12182361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 198 - 381
Target Start/End: Original strand, 12175205 - 12175390
Alignment:
| Q |
198 |
aatgtcaacgaaggaatttaatgttttttgtactatttcttcctcatcttgcctataaatacataactttcagacacttcattttcatcgatca--atac |
295 |
Q |
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| T |
12175205 |
aatgtcaaccaaagaatttaatgctttttgttctatttcttcctcatcttgcctataaatacataactttcagtcacttcattttcatcgatcaatatac |
12175304 |
T |
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| Q |
296 |
aatagtttcatgatgagttataagaaaatgaattccaaggggttactttttctaacaatgttgctggcttccatccttctcatctc |
381 |
Q |
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| T |
12175305 |
aatagtttcaaagtaagttataagaaaatgaattccaaagggttactttttctagctatgctcttggcttccattcttctcatctc |
12175390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 319 - 378
Target Start/End: Original strand, 12149469 - 12149528
Alignment:
| Q |
319 |
gaaaatgaattccaaggggttactttttctaacaatgttgctggcttccatccttctcat |
378 |
Q |
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| T |
12149469 |
gaaaatgaattccaaggcgttactttttctagccatgttgttggcttccatccttctcat |
12149528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 377
Target Start/End: Complemental strand, 12146339 - 12146282
Alignment:
| Q |
320 |
aaaatgaattccaaggggttactttttctaacaatgttgctggcttccatccttctca |
377 |
Q |
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| T |
12146339 |
aaaatgaattccaaggctttactttttctagctatgttgttggcttccatccttctca |
12146282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 295
Target Start/End: Original strand, 12163847 - 12163912
Alignment:
| Q |
230 |
ctatttcttcctcatcttgcctataaatacataactttcagacacttcattttcatcgatcaatac |
295 |
Q |
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| T |
12163847 |
ctatttctgcctcaccttgcctataaatacccaacatttggtcacttcattttcatcaatcaatac |
12163912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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