View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11858_low_8 (Length: 393)
Name: NF11858_low_8
Description: NF11858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11858_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 12 - 378
Target Start/End: Original strand, 37291135 - 37291501
Alignment:
| Q |
12 |
gagatgaaactgcagttaaacaactgaaataaccgaacggtagacaatgacagttcatggtttaactggttgaattatctgattcggtttttaaaacatt |
111 |
Q |
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| T |
37291135 |
gagatgaaactgcagttaaacaactgaaataaccgaacggtagacaatgacagttcatggtttaactggttgaattatctgattcggtttttaaaacatt |
37291234 |
T |
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| Q |
112 |
gctcacaacatccaaacaaaacaaaaaattaccactaactaattaccccttcattgcgatcatgtgatacaacatcaatgcttgaagagggatcattcag |
211 |
Q |
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| T |
37291235 |
gctcacaacatccaaacaaaacaaaaaattaccactaactaattaccccttcattgcgatcatgcgatacaacatcaatgcttgaagagggatcattcag |
37291334 |
T |
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| Q |
212 |
caaaccatctttgtcacccgatgacatacctctcgacaaagacctcatgaatggttctgagcttttcctcacaattggtttcccataggtaggtggtttt |
311 |
Q |
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| T |
37291335 |
caaaccatctttgtcacccgatgacatacctctcgacaaagacctcatgaatggttctgagcttttcctcacaattggtttcccataggtaggtggtttt |
37291434 |
T |
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| Q |
312 |
ggattcccaccatatttccacaatccatttttgcctcctagtttccattcactatatgatttaagtg |
378 |
Q |
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| T |
37291435 |
ggattcccaccatatttccacaatccatttttgcctcctagtttccattcactatatgatttaagtg |
37291501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 46214829 - 46214769
Alignment:
| Q |
251 |
agacctcatgaatggttctgagcttttcctcacaattggtttcccataggtaggtggtttt |
311 |
Q |
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| T |
46214829 |
agacttcatgaatggttctgagtttttcctcaaaattggtttcccagatgtaggtggtttt |
46214769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 657521 - 657581
Alignment:
| Q |
15 |
atgaaactgcagttaaacaactgaaataaccgaacggtagacaatgacagttcatggttta |
75 |
Q |
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| T |
657521 |
atgaaaccgcagttgaacaatttaaataaccgaactgtagacaatgccagctcacggttta |
657581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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