View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11859_low_2 (Length: 588)
Name: NF11859_low_2
Description: NF11859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11859_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 84 - 495
Target Start/End: Original strand, 4374328 - 4374739
Alignment:
| Q |
84 |
ttcaaagacattcatattcaaatcatccaattttcccttcaaaattcaaacagatttcagggatattttcaaaact-atcaaacattcatatgagattac |
182 |
Q |
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| T |
4374328 |
ttcaaagacattcatattcaaatcaaccaattttcccttcaaaattcaaacagatttcagggatattttcaaaacttatcaaacacattcatgagattac |
4374427 |
T |
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| Q |
183 |
ctattaaatcgttcagacttccgcagacgtatttattaaaaatgtatttgtacttagtcggatttaattaactttatttacacaaaaatcacattaacct |
282 |
Q |
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| T |
4374428 |
ctattaactcgttcagacttccgcagacgtatttattaaaaatttatttgtgcttagtcggatttaattaactttatttacacaaaaatcacattaacct |
4374527 |
T |
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| Q |
283 |
attcaaatttaaatttaaatggttatatatgtgatctaatttttctgtccaatagtagtctctttccagcaatctctttctttctaaagagaatctaact |
382 |
Q |
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| T |
4374528 |
attcaaattcaaatttaaatggttatatatgtgatctaatttttctatccaatagtagtctctttccagcaatctctttctttctaaagagaatctaact |
4374627 |
T |
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| Q |
383 |
tcattgtcagagaggagcaaataccatactttcacattgcttaattccacactcgtatagtaatagcttcttaaaccacaagtccactaataattttgca |
482 |
Q |
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| T |
4374628 |
tcattgtcagagaggagcaaataccatactttcacattgcttaattccacactcgtatagtaatagcttctt-aaccacaagtccactaataattttgca |
4374726 |
T |
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| Q |
483 |
aaatgtaaaattt |
495 |
Q |
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| T |
4374727 |
aaatgtaaaattt |
4374739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 397 - 529
Target Start/End: Original strand, 4378332 - 4378463
Alignment:
| Q |
397 |
gagcaaataccatactttcacattgcttaattccacactcgtatagtaatagcttcttaaaccacaagtccactaataattttgcaaaatgtaaaatttc |
496 |
Q |
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||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4378332 |
gagcaaatatcatattttcacattgcttaattccaca-tcgtatagtaatagcttcttaaaccacaagtccactaataattttgcaaaatgtaaaatttc |
4378430 |
T |
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| Q |
497 |
ttcttagcttgtggttctcctttagctaagtat |
529 |
Q |
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| T |
4378431 |
ttcttagcttgtggttctcctttaactaagtat |
4378463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 496 - 575
Target Start/End: Original strand, 4375984 - 4376063
Alignment:
| Q |
496 |
cttcttagcttgtggttctcctttagctaagtatccacgtacgccaatttcaaaacttgttttcttcccttcacgcgtct |
575 |
Q |
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| T |
4375984 |
cttcttagcttgtggttctcctttagctaagtatccacgtacgccaatttcaaaacttgttttcttcccttcacgcgtct |
4376063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 296
Target Start/End: Original strand, 4378183 - 4378253
Alignment:
| Q |
227 |
tatttgtacttagtcggatttaattaactttatttacaca-aaaatcacattaacctattcaaatttaaat |
296 |
Q |
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| T |
4378183 |
tatttgtgtttattcggatttagttgaatttatttacacacaaaatcacagtaacctattcaaatttaaat |
4378253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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