View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1185_high_10 (Length: 414)

Name: NF1185_high_10
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1185_high_10
NF1185_high_10
[»] chr1 (4 HSPs)
chr1 (291-372)||(46902040-46902121)
chr1 (208-298)||(46901929-46902019)
chr1 (144-194)||(46901663-46901713)
chr1 (30-71)||(46901552-46901593)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 291 - 372
Target Start/End: Original strand, 46902040 - 46902121
Alignment:
Q  291 ctcatgtttttagactcatgtattggaaggtgattccaaaaggagaagcaaaccaaattgatcccagccaatcccactccat 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46902040 ctcatgtttttagactcatgtattggaaggtgattccaaaaggagaagcaaaccaaattgatcccagccaatcccactccat 46902121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 46901929 - 46902019
Alignment:
Q  208 aaataaattcatcaagcaaatcttgaacaatcgctcccatgcagatattattgttctgctgctggaactaaacgcaaccatacctcatgtt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||| ||||    
T  46901929 aaataaattcatcaagcaaatcttgaacaatcgctcccatgcagatattattgttcttgtgctggaactaaatgcaaccatacctcctgtt 46902019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 46901663 - 46901713
Alignment:
Q  144 tatgttgtgctcttaattgaaaatggttttcacttgtcaattatatctata 194  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46901663 tatgttgtgctcttgattgaaaatggttttcacttgtcaattatatctata 46901713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 46901552 - 46901593
Alignment:
Q  30 gttcttgtgttttgtgttgtaaggtgatggtgtatattatag 71  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  46901552 gttcttgtgttttgtgttgtaaggtgatggtgtatattatag 46901593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University