View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1185_high_11 (Length: 411)
Name: NF1185_high_11
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_high_11 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 5 - 399
Target Start/End: Complemental strand, 28608829 - 28608435
Alignment:
| Q |
5 |
gaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtat |
104 |
Q |
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| T |
28608829 |
gaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtat |
28608730 |
T |
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| Q |
105 |
atgtcttcctgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatac |
204 |
Q |
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| T |
28608729 |
atgtcttcgtgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatac |
28608630 |
T |
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| Q |
205 |
tttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggcttctccatatgagaagcaacaactgcaccatcacgtccaacgag |
304 |
Q |
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| T |
28608629 |
tttctaactctatctgggatcttgtaagattttgtgttccagattggccactaggcttctccatatgagaagcaacaagtgcaccatcacgtccaacgag |
28608530 |
T |
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| Q |
305 |
ttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataacccctacagcctgacgagtat |
399 |
Q |
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| T |
28608529 |
ttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataacccctacagcttgacgagtat |
28608435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 17 - 399
Target Start/End: Original strand, 438087 - 438469
Alignment:
| Q |
17 |
agttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctga |
116 |
Q |
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| T |
438087 |
agttgtttcgagtgcaccttctgaacttagttgtttgtggaatggaaggagaatcaaacttgtacatttttcattagccgagttgtatatatcttcgtga |
438186 |
T |
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| Q |
117 |
atggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactcta |
216 |
Q |
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| T |
438187 |
atggttgcatagtttgacacaacatttagtgtttggactctaatagcatcatatgcctctttgaatgcttcaaaggtattggtaatgctttctaactcta |
438286 |
T |
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| Q |
217 |
tctgggatctcgtaagattttgtgttctagattggccactaggcttctccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggta |
316 |
Q |
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| T |
438287 |
gctgggattgtgtaagattttgtgttccagattggccactagatttttccatatgagaagcaacaagggcaccaacacgtccaacgatttcaacaaggta |
438386 |
T |
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| Q |
317 |
aagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataacccctacagcctgacgagtat |
399 |
Q |
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| T |
438387 |
aaggccaaaaacatgtataggggaaattctagtggcattgaaatattcaatgaggctaataactcctacggcctgacgagtat |
438469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 48 - 396
Target Start/End: Complemental strand, 13660157 - 13659809
Alignment:
| Q |
48 |
tgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaacg |
147 |
Q |
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| T |
13660157 |
tgtttatggaatggaagtataatcatgcttgtgcgtttttcattagcagagttatatatgtcctcatgaatggttgaataggatgacacaacatttaagg |
13660058 |
T |
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| Q |
148 |
tttctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctaga |
247 |
Q |
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| T |
13660057 |
tttcgactctgacagcatcatatgcctctccaagtgcttcaaatgtattattaatgctttcttgctctacttgggatcttgtaagattttgcgctccagg |
13659958 |
T |
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| Q |
248 |
ttggccactaggcttctccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtcta |
347 |
Q |
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|||| ||||||||| |||||||||| ||||||| ||||||| |||||| |||||||| |||||||||||| |||| ||| |||||||||| |||| |
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| T |
13659957 |
ttggttactaggcttatccatatgagcggcaacaagtgcaccagtacgtcctttgagttcaataaggtaaagtgcgaaaacatgtataggggaaattcta |
13659858 |
T |
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| Q |
348 |
gtggcattgaaagattcaatgaggctaataacccctacagcctgacgag |
396 |
Q |
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| T |
13659857 |
gtagcattgaaagattcaacgaggctgataacccctgtagcctggcgag |
13659809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 48 - 399
Target Start/End: Complemental strand, 13652657 - 13652306
Alignment:
| Q |
48 |
tgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaacg |
147 |
Q |
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||||| ||||||||||| | ||||| |||||| |||||||| ||| || |||| |||||||| || |||||||||||||| |||||||||||||| | |
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| T |
13652657 |
tgtttatggaatggaagtataatcatgcttgtgtgtttttcattagctgaattatatatgtcctcgtgaatggttgcataggatgacacaacatttaagg |
13652558 |
T |
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| Q |
148 |
tttctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctaga |
247 |
Q |
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| T |
13652557 |
ttcggactctaacagcatcgtacgcctctccaaatgcttcaaatgtattattaatgctttcttgctctacctgggaactggtaagattttgtgctccagg |
13652458 |
T |
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| Q |
248 |
ttggccactaggcttctccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtcta |
347 |
Q |
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||| |||||||||| |||||||||| |||||||| |||||| |||||| |||||||| ||||||||||| ||||| ||| |||||||||| |||| |
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| T |
13652457 |
ttgcacactaggcttatccatatgagcagcaacaagtgcaccggtacgtcctttgagttcaataaggtaaagtgaaaaaacatgtataggggaaattcta |
13652358 |
T |
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| Q |
348 |
gtggcattgaaagattcaatgaggctaataacccctacagcctgacgagtat |
399 |
Q |
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| T |
13652357 |
gtggcattgaaagactgaatgaggttgataacccctatagcgtggcgagtat |
13652306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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