View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1185_high_16 (Length: 326)
Name: NF1185_high_16
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 38249804 - 38249491
Alignment:
| Q |
1 |
gaatgaagaagtcatgctaataataaattctgatattgctttcccgagtgtgaaatgaaagattgtgaagaacattatcatgtgatgatgatgaggtggg |
100 |
Q |
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| T |
38249804 |
gaatgaagaagtcatgctaataataaattctgatattgctttcccgagtgtgaaatgaaagattgtgaagaacattatcatgtgatgatgatgaggtggg |
38249705 |
T |
|
| Q |
101 |
tctcaggtacattttctatataaaaatacttcgaatagtagctagttttctcgtcaaacaaagctcaactctgccatttccaaactatctttctgaggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38249704 |
tctcaggtacattttctatataaaaatacttcgaatagtagctagttttctcgtcaaacaaagctcaactctgccatttccaaactatctttctgaggaa |
38249605 |
T |
|
| Q |
201 |
cgcaactcaagccattccatcttctcttctgcatgcttttgctccgtattgattgtgttcaaactatgttttttcatgcatatttgtgtagtttatcttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38249604 |
cgcaactcaagccattccatcttctcttctgcatgcttttgctccgtattgattgtgttcaaactatgttttttcatgcatatttgtgtagtttatcttg |
38249505 |
T |
|
| Q |
301 |
ccctttttaatatt |
314 |
Q |
| |
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|| ||||||||||| |
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| T |
38249504 |
ccttttttaatatt |
38249491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 18559900 - 18559846
Alignment:
| Q |
177 |
tttccaaactatctttct---gaggaacgcaactcaagccattccatcttctctt |
228 |
Q |
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| T |
18559900 |
tttccaaactatctttcttctgaggtacgcaactcaagccatttcatcttctctt |
18559846 |
T |
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