View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1185_high_20 (Length: 284)
Name: NF1185_high_20
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 6145915 - 6145673
Alignment:
| Q |
1 |
aattattactcggtgaagcgtctgaagtcattattgtttgttgcggtggtacataaccactgggccacacaggaacaattgttggagaaggaatttgatt |
100 |
Q |
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| T |
6145915 |
aattattactcggtgaagcgtctgaagtcattattgtttgttgcggtggtacataactactgggccacacaggaacaattgttggagaaggaatttgatt |
6145816 |
T |
|
| Q |
101 |
cacaccaccttctaggaataacctaacatgtggagggctattaatttcgg-ccgatttgtagcactacttggtcctgcatttatatcatcatcttcattc |
199 |
Q |
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| T |
6145815 |
cacacgaccttctaggaataacctaacatgtggagggctattaatttcggaccgatttgtagcactacttggtcctgcatttatatcatcatcttcattc |
6145716 |
T |
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| Q |
200 |
atcaggaaatgatcccaaaatgtttcttgtgatgaagacatgt |
242 |
Q |
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| T |
6145715 |
atcaggaaatgatcccaaaatgtttcttgtgatgaagacatgt |
6145673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 6126495 - 6126271
Alignment:
| Q |
5 |
attactcggtgaagcgtctgaagtcattattgtttgttgcggtggtacataaccactgggccacacaggaacaattgttggagaaggaatttgattcaca |
104 |
Q |
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| T |
6126495 |
attactcagcgaagcgtctgaagttgttattggttgttgtggtggtatagaactactgggccacacatgagcaatttttggtgaagcaatttgattcaca |
6126396 |
T |
|
| Q |
105 |
ccaccttctaggaataacctaacatgtggagggctattaatttcg-gccgatttgtagcactacttggtcctgcatttatatcatcatcttcattcatca |
203 |
Q |
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| T |
6126395 |
cgaccttctgagaataacctaacatgtggagggctattaatttcgaactgagtagtagcactacttggtcctgcatctatatcagcatcttcatacatca |
6126296 |
T |
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| Q |
204 |
ggaaatgatcccaaaatgtttcttg |
228 |
Q |
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||| | |||||||||||||||||| |
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| T |
6126295 |
agaacttatcccaaaatgtttcttg |
6126271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 34283679 - 34283569
Alignment:
| Q |
21 |
tctgaagtcattattgtttgttgcggtggtacataaccactgggccacacaggaacaattgttggagaaggaatttgattcacaccaccttctaggaata |
120 |
Q |
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||||||||| |||||| |||| | ||||||||| ||| | | ||||||||| ||| ||| ||||||||||||||| |||||||| ||||||| |||| |
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| T |
34283679 |
tctgaagtcgttattggttgtcgtggtggtacaaaactaataggccacacatgaaaaatagttggagaaggaattcgattcacaagaccttctgtcaata |
34283580 |
T |
|
| Q |
121 |
acctaacatgt |
131 |
Q |
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| T |
34283579 |
acctaacatgt |
34283569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 34282889 - 34283003
Alignment:
| Q |
15 |
gaagcgtctgaagtcattattgtttgttgcggtggtacataaccactgggccacacaggaacaattgttggagaaggaatttgattcacaccaccttcta |
114 |
Q |
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|||| |||||||||| |||||| |||| | |||| |||| ||| || ||||||||| | ||||| | |||||||||||||||||||||| ||||||| |
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| T |
34282889 |
gaagggtctgaagtcgttattggttgtcgtggtg-tacaaaactaccaggccacacatgcacaatagatggagaaggaatttgattcacatgaccttctg |
34282987 |
T |
|
| Q |
115 |
ggaataacctaacatg |
130 |
Q |
| |
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| T |
34282988 |
tcaataacctaacatg |
34283003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 33731372 - 33731437
Alignment:
| Q |
158 |
gtagcactacttggtcctgcatttatatcatcatcttcattcatcaggaaatgatcccaaaatgtt |
223 |
Q |
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|||| ||||||| ||||||| | || |||| ||||||||| ||| | ||||||||||||||||||| |
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| T |
33731372 |
gtagtactacttagtcctgcttctacatcaacatcttcatccatgatgaaatgatcccaaaatgtt |
33731437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 33802751 - 33802816
Alignment:
| Q |
158 |
gtagcactacttggtcctgcatttatatcatcatcttcattcatcaggaaatgatcccaaaatgtt |
223 |
Q |
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|||| ||||||| ||||||| | || |||| ||||||||| ||| | ||||||||||||||||||| |
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| T |
33802751 |
gtagtactacttagtcctgcttctacatcaacatcttcatccatgatgaaatgatcccaaaatgtt |
33802816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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