View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1185_high_28 (Length: 251)
Name: NF1185_high_28
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 4 - 246
Target Start/End: Original strand, 24561460 - 24561702
Alignment:
| Q |
4 |
tatattgcagatcctttgttagtcttcctttatcggccacaacaaaacaacctcaatgaaaagcaagactgcacaataatactccaaatcaaatacatga |
103 |
Q |
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| T |
24561460 |
tatattgcagatcctttgttagtcttcctttatcggccacaacaaaacaacctcaatgaaaagcaagactgcacaataatactccaaatcaaatacatga |
24561559 |
T |
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| Q |
104 |
gttgcttattcatgaagcaactacaataaagattttaagggtaaccaattacggattttgattctcaaatatcaaatggtgatgcagttcaaatgctttc |
203 |
Q |
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| T |
24561560 |
gttgcttattcatgaagcaactacaataaagattttaagggtaaccaattgcggattttgattctcaaatatcaaatggtgatgcagttcaaatgctttc |
24561659 |
T |
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| Q |
204 |
aataggatatctcttaaaccaatggtagtctcttcatctcact |
246 |
Q |
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| T |
24561660 |
aataggatatctcttaaaccaatggtagtctcttcatcacact |
24561702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 37223844 - 37223647
Alignment:
| Q |
1 |
aaatatattgcagatcctttgttagtcttcctttatcggccacaacaaaacaacctcaatgaaaagcaagactgcacaataatactccaaatcaaataca |
100 |
Q |
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| T |
37223844 |
aaatatactgctgatcctttgttactttttctttattggccataacaaaacaatgtcaatgaagagcaagactgcacaataatactccaaatcaaataca |
37223745 |
T |
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| Q |
101 |
tgagttgcttattcatgaagcaactacaataaagattttaagggtaaccaattacggattttgattctcaaatatcaaatggtgatgcagttcaaatg |
198 |
Q |
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| T |
37223744 |
taagttgcttatttatgaagcaacaacaataaagattttaaaggtaaccaattgtggattttgattctcaaatatcaaatggtgacatagttcaaatg |
37223647 |
T |
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