View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1185_high_3 (Length: 548)

Name: NF1185_high_3
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1185_high_3
NF1185_high_3
[»] chr8 (11 HSPs)
chr8 (442-507)||(45239360-45239425)
chr8 (441-506)||(42319909-42319974)
chr8 (444-507)||(5240912-5240975)
chr8 (453-506)||(38684847-38684900)
chr8 (471-509)||(32721323-32721361)
chr8 (452-506)||(34310324-34310378)
chr8 (465-507)||(43418199-43418241)
chr8 (475-507)||(9885367-9885399)
chr8 (475-506)||(4970052-4970083)
chr8 (460-495)||(42293495-42293530)
chr8 (475-507)||(23830912-23830944)
[»] chr1 (4 HSPs)
chr1 (435-506)||(51382509-51382580)
chr1 (442-506)||(41862753-41862817)
chr1 (473-508)||(38509035-38509070)
chr1 (473-506)||(39183239-39183272)
[»] chr6 (7 HSPs)
chr6 (441-506)||(31661143-31661208)
chr6 (458-506)||(20910753-20910801)
chr6 (458-506)||(20925201-20925249)
chr6 (442-506)||(15298411-15298475)
chr6 (506-543)||(164439-164476)
chr6 (471-507)||(7018679-7018715)
chr6 (475-507)||(26846230-26846262)
[»] chr5 (4 HSPs)
chr5 (435-504)||(6702080-6702149)
chr5 (442-506)||(11298471-11298535)
chr5 (442-507)||(37340352-37340417)
chr5 (473-506)||(26113650-26113683)
[»] chr4 (4 HSPs)
chr4 (435-507)||(2304269-2304341)
chr4 (436-507)||(16030588-16030659)
chr4 (450-507)||(33315910-33315967)
chr4 (506-543)||(18207933-18207970)
[»] scaffold0192 (1 HSPs)
scaffold0192 (459-507)||(19120-19168)
[»] chr2 (7 HSPs)
chr2 (438-506)||(6673889-6673957)
chr2 (473-506)||(16970265-16970298)
chr2 (473-506)||(28003478-28003511)
chr2 (473-506)||(38993391-38993424)
chr2 (459-495)||(12444891-12444927)
chr2 (475-503)||(27534974-27535002)
chr2 (471-507)||(32286934-32286970)
[»] scaffold0790 (1 HSPs)
scaffold0790 (453-507)||(3948-4002)
[»] chr7 (4 HSPs)
chr7 (471-507)||(39262778-39262814)
chr7 (435-506)||(30063337-30063408)
chr7 (471-507)||(48844140-48844176)
chr7 (475-506)||(2440075-2440106)
[»] chr3 (6 HSPs)
chr3 (457-495)||(15993035-15993073)
chr3 (475-508)||(50719204-50719237)
chr3 (475-508)||(50793611-50793644)
chr3 (473-506)||(29157525-29157558)
chr3 (467-495)||(14171226-14171254)
chr3 (467-495)||(48763556-48763584)
[»] scaffold0188 (1 HSPs)
scaffold0188 (473-506)||(28312-28345)
[»] scaffold0015 (1 HSPs)
scaffold0015 (473-509)||(202946-202982)


Alignment Details
Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 442 - 507
Target Start/End: Complemental strand, 45239425 - 45239360
Alignment:
Q  442 ttttattctatatcaaattattccggctcataagacccgtgcggcgcacgggtcggcgttctagtt 507  Q
    ||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45239425 ttttattgtgtatcaatttattccggctcataagacccgtgcggcgcacgggtcggcgttctagtt 45239360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 441 - 506
Target Start/End: Original strand, 42319909 - 42319974
Alignment:
Q  441 gttttattctatatcaaattattccggctcataagacccgtgcggcgcacgggtcggcgttctagt 506  Q
    |||||||| | ||||||||||||||||||||||||||  |||||||||||||||| ||||||||||    
T  42319909 gttttattgtgtatcaaattattccggctcataagacttgtgcggcgcacgggtccgcgttctagt 42319974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 444 - 507
Target Start/End: Complemental strand, 5240975 - 5240912
Alignment:
Q  444 ttattctatatcaaattattccggctcataagacccgtgcggcgcacgggtcggcgttctagtt 507  Q
    ||||| ||||||||||||||  |||||||||||||||||||| |||||||||| || |||||||    
T  5240975 ttattatatatcaaattattatggctcataagacccgtgcggtgcacgggtcgacgatctagtt 5240912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 506
Target Start/End: Original strand, 38684847 - 38684900
Alignment:
Q  453 atcaaattattccggctcataagacccgtgcggcgcacgggtcggcgttctagt 506  Q
    |||||| |||| | ||||||||||||||||||||||||||||||||| ||||||    
T  38684847 atcaaaatatttcagctcataagacccgtgcggcgcacgggtcggcgatctagt 38684900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 509
Target Start/End: Original strand, 32721323 - 32721361
Alignment:
Q  471 ataagacccgtgcggcgcacgggtcggcgttctagttgt 509  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  32721323 ataagacctgtgcggcgcacgggtcggcgttctagttgt 32721361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 506
Target Start/End: Original strand, 34310324 - 34310378
Alignment:
Q  452 tatcaaattattccggctcataagacccgtgcggcgcacgggtcggcgttctagt 506  Q
    ||||||| |||| | ||||||||||||||||||||||||||||||| | ||||||    
T  34310324 tatcaaaatatttcagctcataagacccgtgcggcgcacgggtcggagatctagt 34310378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 507
Target Start/End: Complemental strand, 43418241 - 43418199
Alignment:
Q  465 cggctcataagacccgtgcggcgcacgggtcggcgttctagtt 507  Q
    |||||||| ||||| ||||||||||||||||||||||||||||    
T  43418241 cggctcattagacctgtgcggcgcacgggtcggcgttctagtt 43418199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 475 - 507
Target Start/End: Complemental strand, 9885399 - 9885367
Alignment:
Q  475 gacccgtgcggcgcacgggtcggcgttctagtt 507  Q
    |||||||||||||||||||||||||||||||||    
T  9885399 gacccgtgcggcgcacgggtcggcgttctagtt 9885367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 506
Target Start/End: Original strand, 4970052 - 4970083
Alignment:
Q  475 gacccgtgcggcgcacgggtcggcgttctagt 506  Q
    ||||||||||||||||||||||||||||||||    
T  4970052 gacccgtgcggcgcacgggtcggcgttctagt 4970083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 495
Target Start/End: Original strand, 42293495 - 42293530
Alignment:
Q  460 tattccggctcataagacccgtgcggcgcacgggtc 495  Q
    |||| |||||||||||||||||||||||||||||||    
T  42293495 tatttcggctcataagacccgtgcggcgcacgggtc 42293530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 507
Target Start/End: Original strand, 23830912 - 23830944
Alignment:
Q  475 gacccgtgcggcgcacgggtcggcgttctagtt 507  Q
    |||||||||| ||||||||||||||||||||||    
T  23830912 gacccgtgcgacgcacgggtcggcgttctagtt 23830944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 435 - 506
Target Start/End: Complemental strand, 51382580 - 51382509
Alignment:
Q  435 tattttgttttattctatatcaaattattccggctcataagacccgtgcggcgcacgggtcggcgttctagt 506  Q
    ||||| |||||||  | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  51382580 tatttcgttttatcgtgtatcaaattattccggctcataagacccgtgcggcgcatgggtcggcgttctagt 51382509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 506
Target Start/End: Complemental strand, 41862817 - 41862753
Alignment:
Q  442 ttttattctatatcaaattattccggctcataagacccgtgcggcgcacgggtcggcgttctagt 506  Q
    ||||||| | |||||||||||| || |||||| ||||| ||||| ||||||||| ||||||||||    
T  41862817 ttttattgtgtatcaaattatttcgactcatacgacccatgcggtgcacgggtcagcgttctagt 41862753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 508
Target Start/End: Original strand, 38509035 - 38509070
Alignment:
Q  473 aagacccgtgcggcgcacgggtcggcgttctagttg 508  Q
    |||||||||||||||||||||| |||||||||||||    
T  38509035 aagacccgtgcggcgcacgggttggcgttctagttg 38509070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 506
Target Start/End: Original strand, 39183239 - 39183272
Alignment:
Q  473 aagacccgtgcggcgcacgggtcggcgttctagt 506  Q
    |||||||||||||||||||| |||||||||||||    
T  39183239 aagacccgtgcggcgcacggatcggcgttctagt 39183272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 441 - 506
Target Start/End: Complemental strand, 31661208 - 31661143
Alignment:
Q  441 gttttattctatatcaaattattccggctcataagacccgtgcggcgcacgggtcggcgttctagt 506  Q
    |||||||| | ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  31661208 gttttattgtgtatcaaattattccggctcataagacctgtgcggcgcacgggtccgcgttctagt 31661143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 20910801 - 20910753
Alignment:
Q  458 attattccggctcataagacccgtgcggcgcacgggtcggcgttctagt 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20910801 attattccggctcataagacccgtgcggcgcacgggtcggcgttctagt 20910753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 20925249 - 20925201
Alignment:
Q  458 attattccggctcataagacccgtgcggcgcacgggtcggcgttctagt 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20925249 attattccggctcataagacccgtgcggcgcacgggtcggcgttctagt 20925201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 442 - 506
Target Start/End: Original strand, 15298411 - 15298475
Alignment:
Q  442 ttttattctatatcaaattattccggctcataagacccgtgcggcgcacgggtcggcgttctagt 506  Q
    ||||||| | |||||||||||||| ||| |||||||| ||||||||||||| |||||||||||||    
T  15298411 ttttattatgtatcaaattattccagctaataagacctgtgcggcgcacggatcggcgttctagt 15298475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 543
Target Start/End: Original strand, 164439 - 164476
Alignment:
Q  506 ttgtacttagcaaactgtgtgatgtcatttaacctatg 543  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  164439 ttgtacttagcaaaccgtgtgatgtcatttaacctatg 164476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 507
Target Start/End: Original strand, 7018679 - 7018715
Alignment:
Q  471 ataagacccgtgcggcgcacgggtcggcgttctagtt 507  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  7018679 ataagacccatgcggcgcacgggtcgacgttctagtt 7018715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 507
Target Start/End: Original strand, 26846230 - 26846262
Alignment:
Q  475 gacccgtgcggcgcacgggtcggcgttctagtt 507  Q
    ||||||||||| |||||||||||||||||||||    
T  26846230 gacccgtgcggtgcacgggtcggcgttctagtt 26846262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 435 - 504
Target Start/End: Original strand, 6702080 - 6702149
Alignment:
Q  435 tattttgttttattctatatcaaattattccggctcataagacccgtgcggcgcacgggtcggcgttcta 504  Q
    ||||| |||||||| | ||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  6702080 tatttcgttttattgtgtatcaaattattctggctcataagacccgtgcggtgcacgggtcggcgttcta 6702149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 442 - 506
Target Start/End: Complemental strand, 11298535 - 11298471
Alignment:
Q  442 ttttattctatatcaaattattccggctcataagacccgtgcggcgcacgggtcggcgttctagt 506  Q
    ||||||| | ||||||||| |||| ||||||||||||| | ||||||||||||||||||||||||    
T  11298535 ttttattatgtatcaaattgttccagctcataagacccatacggcgcacgggtcggcgttctagt 11298471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 442 - 507
Target Start/End: Original strand, 37340352 - 37340417
Alignment:
Q  442 ttttattctatatcaaattattccggctcataagacccgtgcggcgcacgggtcggcgttctagtt 507  Q
    ||||||| | |||||| || |||| ||| ||||||||||||||| |||||||||||||||||||||    
T  37340352 ttttattatgtatcaatttgttccagctaataagacccgtgcggggcacgggtcggcgttctagtt 37340417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 506
Target Start/End: Original strand, 26113650 - 26113683
Alignment:
Q  473 aagacccgtgcggcgcacgggtcggcgttctagt 506  Q
    ||||||||||||||||||||||| ||||||||||    
T  26113650 aagacccgtgcggcgcacgggtcagcgttctagt 26113683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 435 - 507
Target Start/End: Original strand, 2304269 - 2304341
Alignment:
Q  435 tattttgttttattctatatcaaattattccggctcataagacccgtgcggcgcacgggtcggcgttctagtt 507  Q
    ||||| |||||||| | ||||||||||||  |||||||||||||| |||||||||||||||||||||||||||    
T  2304269 tatttcgttttattgtttatcaaattattttggctcataagacccatgcggcgcacgggtcggcgttctagtt 2304341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 436 - 507
Target Start/End: Complemental strand, 16030659 - 16030588
Alignment:
Q  436 attttgttttattctatatcaaattattccggctcataagacccgtgcggcgcacgggtcggcgttctagtt 507  Q
    |||| |||||||| | |||||||||||||  ||||||||||||||||||||||||||||||| |||||||||    
T  16030659 atttcgttttattgtgtatcaaattattcgagctcataagacccgtgcggcgcacgggtcggtgttctagtt 16030588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 507
Target Start/End: Original strand, 33315910 - 33315967
Alignment:
Q  450 tatatcaaattattccggctcataagacccgtgcggcgcacgggtcggcgttctagtt 507  Q
    |||||||||||||||| ||||||||||||||||||||| || | ||||||||||||||    
T  33315910 tatatcaaattattccagctcataagacccgtgcggcgaacagatcggcgttctagtt 33315967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 543
Target Start/End: Complemental strand, 18207970 - 18207933
Alignment:
Q  506 ttgtacttagcaaactgtgtgatgtcatttaacctatg 543  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  18207970 ttgtacttagcaaaccgtgtgatgtcatttaacctatg 18207933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 459 - 507
Target Start/End: Complemental strand, 19168 - 19120
Alignment:
Q  459 ttattccggctcataagacccgtgcggcgcacgggtcggcgttctagtt 507  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19168 ttattccggctcataagacccgtgcggcgcacggatcggcgttctagtt 19120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 438 - 506
Target Start/End: Original strand, 6673889 - 6673957
Alignment:
Q  438 tttgttttattctatatcaaattattccggctcataagacccgtgcggcgcacgggtcggcgttctagt 506  Q
    ||||||||||| | || ||||||||||  |||||||||||||||||||||||||||||||| |||||||    
T  6673889 tttgttttattgtgtaccaaattattcttgctcataagacccgtgcggcgcacgggtcggccttctagt 6673957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 506
Target Start/End: Original strand, 16970265 - 16970298
Alignment:
Q  473 aagacccgtgcggcgcacgggtcggcgttctagt 506  Q
    |||||||||||| |||||||||||||||||||||    
T  16970265 aagacccgtgcgacgcacgggtcggcgttctagt 16970298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 506
Target Start/End: Original strand, 28003478 - 28003511
Alignment:
Q  473 aagacccgtgcggcgcacgggtcggcgttctagt 506  Q
    ||||||||||||||||| ||||||||||||||||    
T  28003478 aagacccgtgcggcgcaagggtcggcgttctagt 28003511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 506
Target Start/End: Complemental strand, 38993424 - 38993391
Alignment:
Q  473 aagacccgtgcggcgcacgggtcggcgttctagt 506  Q
    ||||||||||||||||||||||| ||||||||||    
T  38993424 aagacccgtgcggcgcacgggtcagcgttctagt 38993391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 495
Target Start/End: Complemental strand, 12444927 - 12444891
Alignment:
Q  459 ttattccggctcataagacccgtgcggcgcacgggtc 495  Q
    |||||||  ||||||||||||||||||||||||||||    
T  12444927 ttattccatctcataagacccgtgcggcgcacgggtc 12444891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 503
Target Start/End: Original strand, 27534974 - 27535002
Alignment:
Q  475 gacccgtgcggcgcacgggtcggcgttct 503  Q
    |||||||||||||||||||||||||||||    
T  27534974 gacccgtgcggcgcacgggtcggcgttct 27535002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 507
Target Start/End: Original strand, 32286934 - 32286970
Alignment:
Q  471 ataagacccgtgcggcgcacgggtcggcgttctagtt 507  Q
    ||||||||||||||||||||||||||||  |||||||    
T  32286934 ataagacccgtgcggcgcacgggtcggctatctagtt 32286970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 453 - 507
Target Start/End: Original strand, 3948 - 4002
Alignment:
Q  453 atcaaattattccggctcataagacccgtgcggcgcacgggtcggcgttctagtt 507  Q
    |||||| |||| | ||||||||||||||||||||||||||||||||| |||||||    
T  3948 atcaaaatatttcagctcataagacccgtgcggcgcacgggtcggcgatctagtt 4002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 471 - 507
Target Start/End: Complemental strand, 39262814 - 39262778
Alignment:
Q  471 ataagacccgtgcggcgcacgggtcggcgttctagtt 507  Q
    |||||||||||||||||||||||||||||||||||||    
T  39262814 ataagacccgtgcggcgcacgggtcggcgttctagtt 39262778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 506
Target Start/End: Original strand, 30063337 - 30063408
Alignment:
Q  435 tattttgttttattctatatcaaattattccggctcataagacccgtgcggcgcacgggtcggcgttctagt 506  Q
    |||||||||||||| | |||||||||||| | | | || ||||||||| |||||| ||||||||||||||||    
T  30063337 tattttgttttattgtgtatcaaattatttcagtttatgagacccgtgtggcgcatgggtcggcgttctagt 30063408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 507
Target Start/End: Complemental strand, 48844176 - 48844140
Alignment:
Q  471 ataagacccgtgcggcgcacgggtcggcgttctagtt 507  Q
    |||||||||||||| ||||||||||||||||||||||    
T  48844176 ataagacccgtgcgacgcacgggtcggcgttctagtt 48844140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 506
Target Start/End: Original strand, 2440075 - 2440106
Alignment:
Q  475 gacccgtgcggcgcacgggtcggcgttctagt 506  Q
    ||||||||||||||||||||||||||||||||    
T  2440075 gacccgtgcggcgcacgggtcggcgttctagt 2440106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 495
Target Start/End: Complemental strand, 15993073 - 15993035
Alignment:
Q  457 aattattccggctcataagacccgtgcggcgcacgggtc 495  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  15993073 aattattccggttcataagacccgtgcggcgcacgggtc 15993035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 475 - 508
Target Start/End: Original strand, 50719204 - 50719237
Alignment:
Q  475 gacccgtgcggcgcacgggtcggcgttctagttg 508  Q
    ||||||||||||||||||||||||||||||||||    
T  50719204 gacccgtgcggcgcacgggtcggcgttctagttg 50719237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 475 - 508
Target Start/End: Complemental strand, 50793644 - 50793611
Alignment:
Q  475 gacccgtgcggcgcacgggtcggcgttctagttg 508  Q
    ||||||||||||||||||||||||||||||||||    
T  50793644 gacccgtgcggcgcacgggtcggcgttctagttg 50793611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 506
Target Start/End: Original strand, 29157525 - 29157558
Alignment:
Q  473 aagacccgtgcggcgcacgggtcggcgttctagt 506  Q
    |||||||||||| |||||||||||||||||||||    
T  29157525 aagacccgtgcgccgcacgggtcggcgttctagt 29157558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 495
Target Start/End: Complemental strand, 14171254 - 14171226
Alignment:
Q  467 gctcataagacccgtgcggcgcacgggtc 495  Q
    |||||||||||||||||||||||||||||    
T  14171254 gctcataagacccgtgcggcgcacgggtc 14171226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 495
Target Start/End: Original strand, 48763556 - 48763584
Alignment:
Q  467 gctcataagacccgtgcggcgcacgggtc 495  Q
    |||||||||||||||||||||||||||||    
T  48763556 gctcataagacccgtgcggcgcacgggtc 48763584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 473 - 506
Target Start/End: Complemental strand, 28345 - 28312
Alignment:
Q  473 aagacccgtgcggcgcacgggtcggcgttctagt 506  Q
    ||||||||||||||||||||||||||||||||||    
T  28345 aagacccgtgcggcgcacgggtcggcgttctagt 28312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 509
Target Start/End: Complemental strand, 202982 - 202946
Alignment:
Q  473 aagacccgtgcggcgcacgggtcggcgttctagttgt 509  Q
    |||||||||||| |||||||||||||||||| |||||    
T  202982 aagacccgtgcgacgcacgggtcggcgttctggttgt 202946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University