View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1185_high_32 (Length: 242)

Name: NF1185_high_32
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1185_high_32
NF1185_high_32
[»] chr8 (4 HSPs)
chr8 (1-223)||(15851556-15851778)
chr8 (4-223)||(15858456-15858675)
chr8 (4-223)||(15844321-15844540)
chr8 (4-223)||(15865524-15865743)
[»] chr4 (1 HSPs)
chr4 (67-167)||(11019477-11019577)
[»] chr2 (8 HSPs)
chr2 (115-218)||(30484791-30484894)
chr2 (47-173)||(30404535-30404661)
chr2 (25-173)||(8378960-8379108)
chr2 (25-153)||(30384998-30385126)
chr2 (3-179)||(23783310-23783486)
chr2 (25-173)||(30395750-30395898)
chr2 (122-180)||(30431413-30431471)
chr2 (115-180)||(30425373-30425438)
[»] chr5 (1 HSPs)
chr5 (26-179)||(41626803-41626956)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 15851778 - 15851556
Alignment:
Q  1 catttgattcaccaagatcaagatctatggggtgatgatgcaaagaagttcaatcctgaacggttttctgaaggaattgcaaaggcaacaaaaggccaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15851778 catttgattcaccaagatcaagatctatggggtgatgatgcaaagaagttcaatcctgaacggttttctgaaggaattgcaaaggccacaaaaggccaag 15851679  T
Q  101 tttcgtatatcccttttggatggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaatatcactgttgctgcagaattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15851678 tttcgtatatcccttttggatggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaatatcactgttgctgcagaattt 15851579  T
Q  201 ctcattcgaactttctcctaatt 223  Q
    |||||||||||||||||||||||    
T  15851578 ctcattcgaactttctcctaatt 15851556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 15858675 - 15858456
Alignment:
Q  4 ttgattcaccaagatcaagatctatggggtgatgatgcaaagaagttcaatcctgaacggttttctgaaggaattgcaaaggcaacaaaaggccaagttt 103  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||| ||||| ||||||||||||| |||||||||||||| |||||||    
T  15858675 ttgattcaccaagatcatgatctatggggtgatgatgcaaaggagttcaaacctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagttt 15858576  T
Q  104 cgtatatcccttttggatggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaatatcactgttgctgcagaatttctc 203  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  15858575 cttatttcccttttggatggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcagtatcattgttgctgcagaatttctc 15858476  T
Q  204 attcgaactttctcctaatt 223  Q
    ||||||||||||||| ||||    
T  15858475 attcgaactttctccaaatt 15858456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 15844540 - 15844321
Alignment:
Q  4 ttgattcaccaagatcaagatctatggggtgatgatgcaaagaagttcaatcctgaacggttttctgaaggaattgcaaaggcaacaaaaggccaagttt 103  Q
    ||||||||||| ||||||||||||||||| |||||||||||| ||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||||||    
T  15844540 ttgattcaccatgatcaagatctatggggggatgatgcaaaggagttcaaacccgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagttt 15844441  T
Q  104 cgtatatcccttttggatggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaatatcactgttgctgcagaatttctc 203  Q
    | ||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15844440 cttatttcccctttggatggggtcctagaatttgtcttggacaaaactttaccttattagaagcaaagatagcaatatcattgttgctgcagaatttctc 15844341  T
Q  204 attcgaactttctcctaatt 223  Q
    ||| ||||||||||||||||    
T  15844340 atttgaactttctcctaatt 15844321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 15865743 - 15865524
Alignment:
Q  4 ttgattcaccaagatcaagatctatggggtgatgatgcaaagaagttcaatcctgaacggttttctgaaggaattgcaaaggcaacaaaaggccaagttt 103  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||| ||||| ||||||||||||||||||| ||||||||  ||||||    
T  15865743 ttgattcaccaagatcatgatctatggggtgatgatgcaaaggagttcaaacctgaaaggtttgctgaaggaattgcaaaggctacaaaaggaaaagttt 15865644  T
Q  104 cgtatatcccttttggatggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaatatcactgttgctgcagaatttctc 203  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||    
T  15865643 cttatttcccttttggatggggtcctagaatttgtcttggacaaaactttgccttactagaagcaaagatagcaatttcattgctgctgcagaatttctc 15865544  T
Q  204 attcgaactttctcctaatt 223  Q
    ||||||||||||||| ||||    
T  15865543 attcgaactttctccaaatt 15865524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 167
Target Start/End: Original strand, 11019477 - 11019577
Alignment:
Q  67 tctgaaggaattgcaaaggcaacaaaaggccaagtttcgtatatcccttttggatggggtcctagaatttgtcttggacaaaactttgccttattagaag 166  Q
    ||||||||| || ||||||||||||| ||| ||||||| ||  | ||||||||||||||||| ||| ||||| |||||||||||||||  ||||||||||    
T  11019477 tctgaaggagtttcaaaggcaacaaatggcaaagtttcttacttgccttttggatggggtccaagactttgtattggacaaaactttggtttattagaag 11019576  T
Q  167 c 167  Q
    |    
T  11019577 c 11019577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 30484791 - 30484894
Alignment:
Q  115 tttggatggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaatatcactgttgctgcagaatttctcattcgaacttt 214  Q
    |||||| ||||||||||||||||| |||||||||||||| || | || ||||||||||| |||||| || || |  ||||| |||||||||| |||||||    
T  30484791 tttggagggggtcctagaatttgtattggacaaaacttttccatgttggaagcaaagatggcaataacattgattttgcagcatttctcatttgaacttt 30484890  T
Q  215 ctcc 218  Q
    ||||    
T  30484891 ctcc 30484894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 173
Target Start/End: Original strand, 30404535 - 30404661
Alignment:
Q  47 agttcaatcctgaacggttttctgaaggaattgcaaaggcaacaaaaggccaagtttcgtatatcccttttggatggggtcctagaatttgtcttggaca 146  Q
    |||||||||| ||  | ||||| |||||||| ||||| |||||||||||||||||||  | | |||| ||||| |  ||||||||| ||||  | || ||    
T  30404535 agttcaatccagagagattttcggaaggaatcgcaaaagcaacaaaaggccaagtttgttttttcccatttggttatggtcctagagtttgcatggggca 30404634  T
Q  147 aaactttgccttattagaagcaaagat 173  Q
    ||||||||| |||||||||||||||||    
T  30404635 aaactttgctttattagaagcaaagat 30404661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 173
Target Start/End: Complemental strand, 8379108 - 8378960
Alignment:
Q  25 ctatggggtgatgatgcaaagaagttcaatcctgaacggttttctgaaggaattgcaaaggcaacaaaaggccaagtttcgtatatcccttttggatggg 124  Q
    |||||||||||||||||||||| ||||||||||||  | ||| ||||||||||| | || |||||||| ||   | ||   ||| | || |||||| |||    
T  8379108 ctatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatattttccatttggagggg 8379009  T
Q  125 gtcctagaatttgtcttggacaaaactttgccttattagaagcaaagat 173  Q
    |||||||| ||||  | |||||||||||| || |||| |||||||||||    
T  8379008 gtcctagagtttgcatgggacaaaacttttccctattggaagcaaagat 8378960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 30384998 - 30385126
Alignment:
Q  25 ctatggggtgatgatgcaaagaagttcaatcctgaacggttttctgaaggaattgcaaaggcaacaaaaggccaagtttcgtatatcccttttggatggg 124  Q
    ||||||||||||||||| || | ||||||||||||| | |||| || ||||||| | || |||||||| ||   |||||| | | | || ||||||||||    
T  30384998 ctatggggtgatgatgctaaaatgttcaatcctgaaagattttttggaggaatttccaaagcaacaaatggaagagtttcattttttccatttggatggg 30385097  T
Q  125 gtcctagaatttgtcttggacaaaacttt 153  Q
    ||||| |||||||  ||||||||||||||    
T  30385098 gtcctcgaatttgcattggacaaaacttt 30385126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 179
Target Start/End: Complemental strand, 23783486 - 23783310
Alignment:
Q  3 tttgattcaccaagatcaagatctatggggtgatgatgcaaagaagttcaatcctgaacggttttctgaaggaattgcaaaggcaacaaaaggccaagtt 102  Q
    |||||||||||| |||   || ||||||||||||||||| ||||  |||||||||||  | |||||||  |||||| | || |||||||| ||   | ||    
T  23783486 tttgattcaccatgattgtgaactatggggtgatgatgctaagattttcaatcctgagagattttctggtggaatttccaaagcaacaaacggtagattt 23783387  T
Q  103 tcgtatatcccttttggatggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaat 179  Q
    || ||| | || ||||||  |||||||||||| ||  |||||||||||||| || | || ||||||||||| |||||    
T  23783386 tcatattttccgtttggagcgggtcctagaatctgcattggacaaaacttttccctgttggaagcaaagatggcaat 23783310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 173
Target Start/End: Original strand, 30395750 - 30395898
Alignment:
Q  25 ctatggggtgatgatgcaaagaagttcaatcctgaacggttttctgaaggaattgcaaaggcaacaaaaggccaagtttcgtatatcccttttggatggg 124  Q
    |||||||| |||||||| || | ||||||||||||  | ||||| | ||||||| | || |||||||| ||   |||||| | | | || ||||||||||    
T  30395750 ctatggggcgatgatgctaaaatgttcaatcctgagagattttccggaggaatttctaaagcaacaaatggtagagtttcattttttccatttggatggg 30395849  T
Q  125 gtcctagaatttgtcttggacaaaactttgccttattagaagcaaagat 173  Q
    |||| ||||||||  |||||||||||||| || || | |||||||||||    
T  30395850 gtccaagaatttgcattggacaaaacttttccctaatggaagcaaagat 30395898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 30431413 - 30431471
Alignment:
Q  122 ggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaata 180  Q
    ||||||||||||||||  |||||||||||||| || | || ||||||||||| ||||||    
T  30431413 ggggtcctagaatttgaattggacaaaacttttccatgttggaagcaaagatggcaata 30431471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 30425373 - 30425438
Alignment:
Q  115 tttggatggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaata 180  Q
    |||||| ||||||||||||||||  |||||||||||||| |  | || ||||||||||| ||||||    
T  30425373 tttggagggggtcctagaatttgcattggacaaaacttttctatgttggaagcaaagatggcaata 30425438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 179
Target Start/End: Complemental strand, 41626956 - 41626803
Alignment:
Q  26 tatggggtgatgatgcaaagaagttcaatcctgaacggttttctgaaggaattgcaaaggcaacaaaaggccaagtttcgtatatcccttttggatgggg 125  Q
    |||||||||||||||| || | ||||||||||||| | ||||||| ||||||| | || ||||| || ||   |||||| | | | || |||||||||||    
T  41626956 tatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatgggg 41626857  T
Q  126 tcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaat 179  Q
    |||||| || ||  |||| ||||||||| |  |||| ||||||||||| |||||    
T  41626856 tcctaggatctgcattgggcaaaacttttctctattggaagcaaagatggcaat 41626803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University