View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1185_high_33 (Length: 224)
Name: NF1185_high_33
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_high_33 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 31995005 - 31995228
Alignment:
| Q |
1 |
aagtatatgacggatggaatgctgttgagggaattccttactcagcctgagctggacagttatagtgttgtgatggtggatgaggctcatgaaagaacac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31995005 |
aagtatatgacggatggaatgctgttgagggaattccttactcagcctgagctggacagttatagtgttgtgatggtggatgaagctcatgaaagaacac |
31995104 |
T |
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| Q |
101 |
tttcaactgatattttgtttggattagttaaggatgttgctcgtgcccggcctgatcttaagttgctgatatcaagcgccactcttgatgcagagaagtt |
200 |
Q |
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| T |
31995105 |
tttcaactgatattttgtttggattagttaaggatgttgctcgtgcccggcctgatcttaagttgctgatatcaagcgccactcttgatgcagagaagtt |
31995204 |
T |
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| Q |
201 |
cagtaactactttgatcttgctcc |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
31995205 |
cagtaactactttgatcttgctcc |
31995228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 24009460 - 24009679
Alignment:
| Q |
4 |
tatatgacggatggaatgctgttgagggaattccttactcagcctgagctggacagttatagtgttgtgatggtggatgaggctcatgaaagaacacttt |
103 |
Q |
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| T |
24009460 |
tatatgacggatggaatgttgttgagggagttccttgctcaacctgagctggacagttatagtgttgtgatggtggatgaggctcatgaaagaacacttt |
24009559 |
T |
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| Q |
104 |
caactgatattttgtttggattagttaaggatgttgctcgtgcccggcctgatcttaagttgctgatatcaagcgccactcttgatgcagagaagttcag |
203 |
Q |
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| T |
24009560 |
caactgatattttgtttggattacttaaggatgttgctcgtgcccggcctgatcttaagttgttgatatctagtgctactcttgatgcagagaagttcat |
24009659 |
T |
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| Q |
204 |
taactactttgatcttgctc |
223 |
Q |
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| T |
24009660 |
taacttctttgatcatgctc |
24009679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 15841459 - 15841678
Alignment:
| Q |
5 |
atatgacggatggaatgctgttgagggaattccttactcagcctgagctggacagttatagtgttgtgatggtggatgaggctcatgaaagaacactttc |
104 |
Q |
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| T |
15841459 |
atatgacggatggaatgttgttgagggaatttcttgctcagcctgagctggacagttatagtgttataatggtagacgaggctcatgaaagaacactttc |
15841558 |
T |
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| Q |
105 |
aactgatattttgtttggattagttaaggatgttgctcgtgcccggcctgatcttaagttgctgatatcaagcgccactcttgatgcagagaagttcagt |
204 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||| ||||||| ||| |
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| T |
15841559 |
aactgatattttgtttggattggttaaggatgttgctcgtacccggcctgatcttaagttgctgatatcaagtgctactcttgatgcaaagaagtttagt |
15841658 |
T |
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| Q |
205 |
aactactttgatcttgctcc |
224 |
Q |
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| T |
15841659 |
aactactttgatcttgctcc |
15841678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 7286975 - 7287045
Alignment:
| Q |
63 |
tagtgttgtgatggtggatgaggctcatgaaagaacactttcaactgatattttgtttggattagttaagg |
133 |
Q |
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| T |
7286975 |
tagtgttgtgatggtggatgaggctcatgaaaggacactctcaactgatatcttgtttgcattagtgaagg |
7287045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 7287400 - 7287453
Alignment:
| Q |
151 |
cctgatcttaagttgctgatatcaagcgccactcttgatgcagagaagttcagt |
204 |
Q |
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|||||||||||||||||||||||||| || || ||||||||||| ||||||||| |
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| T |
7287400 |
cctgatcttaagttgctgatatcaagtgctacacttgatgcagaaaagttcagt |
7287453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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