View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1185_high_4 (Length: 533)
Name: NF1185_high_4
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 92 - 504
Target Start/End: Original strand, 34235688 - 34236100
Alignment:
| Q |
92 |
ccacagatattcctattttcaacaattcaattggattgattgtacaaataagtccaaggataaaattcagagctgcctgcctatatcacattagcaaaga |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34235688 |
ccacagatattcctattttcaacaattcaattggattgactgtacaaataagtccaaggataaaattcagagctgcctgcctatatcacattagcaaaga |
34235787 |
T |
|
| Q |
192 |
tatttgtatcatgagtggcctacacacattttcaagtaccatggtcaaccacttatacaaccaaaatccgaagttgtctcccgtaaaataacataagaaa |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34235788 |
tatttgtatcatgagtggcctacacacattttcaagtaccatggtcaaccacttatacaaccaaaatccgaagttgtctccagtaaaataacataagaaa |
34235887 |
T |
|
| Q |
292 |
ttatattagatataaataaatcacatttgaatatgatataaatcatattaatggtatcaagacaattaatatgttcatcttattaataaatacaaattaa |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34235888 |
ttatattagatataaataaatcacatttgaatatgatataaatcatattaatggtatcaagacaattaatatgttcatcttattaataaatacaaattaa |
34235987 |
T |
|
| Q |
392 |
aactcaaattttgaaatggaaatgagtatgtttaaatagagaggaaaatgtaaatttgtattatcgtgtttgacaagaatgatctcttactttgcatatc |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34235988 |
aactcaaattttgaaatggaaatgagtatgtttaaatagagaggaaaatgtaaatttgtattatcgtgtttgacaagaatgatctcttactttgcatatc |
34236087 |
T |
|
| Q |
492 |
ttttggtgtgatg |
504 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34236088 |
ttttggtgtgatg |
34236100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 5750715 - 5750640
Alignment:
| Q |
13 |
aatattgtcaaacaatttggtgaaacattcgaaacgttaactccgtatcgaatgtccacatgtgacaagaatagca |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5750715 |
aatattgtcaaacaatttggtgaaacattcgaaacgttaactccgtatcgaatgtccacatgtgacaagaatagca |
5750640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University