View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1185_high_7 (Length: 478)
Name: NF1185_high_7
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 127 - 471
Target Start/End: Complemental strand, 6284189 - 6283845
Alignment:
| Q |
127 |
ttttgttggcgcaccaactagttaatcgttttccttttcgatcttccccaagcctctcacattataaatcaacacaattatttaccactgcttgctttct |
226 |
Q |
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| T |
6284189 |
ttttgttggcgcaccaactagttaatcattttccttttcgatcttccccaagcttctcacattataaatcaatacaatcattgaccactgcttgctttct |
6284090 |
T |
|
| Q |
227 |
cccttcttcctttattcaactcatcaactttttcatgttctaccgacttcttaagtattgtttcatcctctatattaaaataaattttgtcattcctttg |
326 |
Q |
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|| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6284089 |
cctttcttcctttattcaactcatcaacttcttcaagttctaccgacttcttaagtattgtttcatcctctatattaaaataaattttgtcattcctttg |
6283990 |
T |
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| Q |
327 |
tcaacgaaaaatccctaccgcatccaactatttcctacatactctccctccacatttcctccaggtgtttctggaactatagtacccccttcctctatct |
426 |
Q |
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| T |
6283989 |
taagcgaaaaatccctactgcatccaactatttcctacctactctccctccacatttcctccaggtgtttccagaactatcgtacccccttcctctatct |
6283890 |
T |
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| Q |
427 |
ataatcaatggaggtgttattggaaaaacctatccttctctgctc |
471 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
6283889 |
ataattaatggcggtgttattggaaaaacctatccttctctgctc |
6283845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 127 - 269
Target Start/End: Complemental strand, 6305716 - 6305577
Alignment:
| Q |
127 |
ttttgttggcgcaccaactagttaatcgttttccttttcgatcttccccaagcctctcacattataaatcaacacaattatttaccactgcttgctttct |
226 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||||||||||||||| ||| | |||| ||||||||| |
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| T |
6305716 |
tttttttggcgcaccaactagttaatcattttccttttcgatct-ctccaagcctctca--ttataaatcaacacaatcattgatcactagttgctttct |
6305620 |
T |
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| Q |
227 |
cccttcttcctttattcaactcatcaactttttcatgttctac |
269 |
Q |
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|||||||||||||||||||| |||| ||| |||||||||||| |
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| T |
6305619 |
cccttcttcctttattcaacacatctgcttcttcatgttctac |
6305577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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