View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1185_low_12 (Length: 462)
Name: NF1185_low_12
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 29 - 366
Target Start/End: Complemental strand, 13857219 - 13856891
Alignment:
| Q |
29 |
acattcagcaaggaatcatcagccgaaaggaaatagagggcttcaaatgataaaatctctactgatcagtatgacaagtatgcctgggaaaggttgcgtt |
128 |
Q |
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| T |
13857219 |
acattcagcaaggaatcatctgccgaaaggaaatagagggcttcaaatgataaaatctctactgatcagtatgacaagtatgccttggaaatgttgcgtt |
13857120 |
T |
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| Q |
129 |
ctatagaaaattagaagataggcgtaaatatctattcaagagtaagtgtctcatttatgctacaggttcttgaatacccttaacagtttgctggatggtt |
228 |
Q |
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| T |
13857119 |
ctatagaaaattagaagataggcgtaaatatctattcaagagtaagtgtctcatttatgctacaggtt---------ccttaacagtttgctggatggtt |
13857029 |
T |
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| Q |
229 |
cttctaacaatgcaaaatttgaggttgattgtcgagctattgatggaattgaatcgtatctcttattcaagttagccaatctgatatctaaacttgttaa |
328 |
Q |
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| T |
13857028 |
cttctaacaatgcaaaatttgagggtgattgtcgagctattaatggaattgaatcgtatctcttattcaagttagccaatctgatatctaaacttgttaa |
13856929 |
T |
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| Q |
329 |
atgcataactcctctttctacaactttggtaccactca |
366 |
Q |
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| T |
13856928 |
atgcataactcctctttctacaactttggtaccactca |
13856891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 43 - 196
Target Start/End: Complemental strand, 13865792 - 13865638
Alignment:
| Q |
43 |
atcatcagccgaaaggaaatagagggcttcaaatgataaaatctctactgatcagtatgacaagtatgcctgggaaaggttgcgttctatagaaaattag |
142 |
Q |
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| T |
13865792 |
atcatcagctgaaaggaaatggcgggattcaaatgataaaatctctactgatcagtatgacaagtatgccttggaaatgttgcattttatagaaaatttg |
13865693 |
T |
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| Q |
143 |
aagataggcgtaaatatctattcaagagtaa-gtgtctcatttatgctacaggtt |
196 |
Q |
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| T |
13865692 |
aagatatgagtaaatatctattcatcaataaggtgtctcctttatgctacaggtt |
13865638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 53 - 329
Target Start/End: Complemental strand, 16022958 - 16022681
Alignment:
| Q |
53 |
gaaaggaaatagagggcttcaaatgataaaatctctactgatcagtatgacaagtat--gcctgggaaaggttgcgttctatagaaaattagaagatagg |
150 |
Q |
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|||||||||| || |||||||||| ||| || ||| |||||||| ||||| | |||| |||| |||| ||||| || ||| ||||||| ||||||| |
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| T |
16022958 |
gaaaggaaatggaaggcttcaaataatacaagctccactgatcaatatgataggtatatgcctttgaaatgttgcattatattgaaaatttgaagataca |
16022859 |
T |
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| Q |
151 |
cgtaaatatctattcaagagtaagtgtctcatttatgctacaggttcttgaatacccttaacagtttgctggatggttcttctaacaatgcaaaatttga |
250 |
Q |
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| T |
16022858 |
tgcaaatatctat-caagactaagtgtctcctttatgctacaggttcatgattgccctttacagtttactggatggctcttctgataattcaaaatttga |
16022760 |
T |
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| Q |
251 |
ggttgattgtcgagctattgatggaattgaatcgtatctcttattcaagttagccaatctgatatctaaacttgttaaa |
329 |
Q |
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|| ||| ||||| |||||| ||||| | |||| ||||||||||||| |||| ||| || |||| ||||||||||||| |
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| T |
16022759 |
ggatgactgtcgtgctattattggaactcaatcatatctcttattcacattagacaaactaatatataaacttgttaaa |
16022681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 182 - 328
Target Start/End: Complemental strand, 26201581 - 26201435
Alignment:
| Q |
182 |
tttatgctacaggttcttgaatacccttaacagtttgctggatggttcttctaacaatgcaaaatttgaggttgattgtcgagctattgatggaattgaa |
281 |
Q |
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|||||||| ||||||| ||||| | ||| ||||||| ||||||||||||||| | ||| |||||||||| | ||| ||||| |||||| ||||| | | |
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| T |
26201581 |
tttatgctgcaggttcatgaattctctttacagtttactggatggttcttctgataattcaaaatttgaagatgactgtcgggctattattggaactcag |
26201482 |
T |
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| Q |
282 |
tcgtatctcttattcaagttagccaatctgatatctaaacttgttaa |
328 |
Q |
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|||||| |||| |||| ||||| ||| ||||||| |||||||||||| |
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| T |
26201481 |
tcgtatgtcttgttcacgttagacaagctgatatataaacttgttaa |
26201435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 182 - 328
Target Start/End: Complemental strand, 29624782 - 29624636
Alignment:
| Q |
182 |
tttatgctacaggttcttgaatacccttaacagtttgctggatggttcttctaacaatgcaaaatttgaggttgattgtcgagctattgatggaattgaa |
281 |
Q |
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|||||||| ||||||| ||||| | ||| ||||||| ||||||||||||||| | ||| |||||||||| | ||| |||||||||||| ||||| | | |
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| T |
29624782 |
tttatgctgcaggttcatgaattctctttacagtttactggatggttcttctgataattcaaaatttgaagatgactgtcgagctattattggaactcag |
29624683 |
T |
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| Q |
282 |
tcgtatctcttattcaagttagccaatctgatatctaaacttgttaa |
328 |
Q |
| |
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|| ||| |||| |||| ||||| ||| ||||||| |||||||||||| |
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| T |
29624682 |
tcatatgtcttgttcacgttagacaagctgatatataaacttgttaa |
29624636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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