View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1185_low_16 (Length: 407)
Name: NF1185_low_16
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 144 - 253
Target Start/End: Original strand, 15935454 - 15935563
Alignment:
| Q |
144 |
acattacatacctgcaagccaccataatatatgaatccaacggaaccagcgtaaaggatacctaaaacaattagaaagaaacaaataagggatgtgatga |
243 |
Q |
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| T |
15935454 |
acattacatacctggaagccaccataatatatgaatccaacggaaccagcgtaaaggatacctaaaacaattagaaagaaacaaataagggttgtgatga |
15935553 |
T |
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| Q |
244 |
gcaatagcat |
253 |
Q |
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| T |
15935554 |
gcaatagcat |
15935563 |
T |
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Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 273 - 351
Target Start/End: Original strand, 15935587 - 15935665
Alignment:
| Q |
273 |
tgggatgaagaagaaagagtaagagtacaaactgtaaataataaaatccttcaaagcaacgggctcgagtatttggggt |
351 |
Q |
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| T |
15935587 |
tgggatgcagaagaaagagtaaaagtacaaactgtaaataataaaatccttcaaagcaactggctcgagtatttggggt |
15935665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 15934390 - 15934444
Alignment:
| Q |
13 |
aatatgtaatggtttgtgattttttgggagatgataatggaaccaatttagagaa |
67 |
Q |
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| T |
15934390 |
aatatgtaatggtttgtgattttttgggagatgataatggaaccaatttagagaa |
15934444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 15935389 - 15935434
Alignment:
| Q |
69 |
aaaacaaggaagggtaataaactgttagggttgagtggaatttgaa |
114 |
Q |
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| T |
15935389 |
aaaacaaggaagggtaataaattgttagggttgagtggaatttgaa |
15935434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 18421718 - 18421666
Alignment:
| Q |
17 |
tgtaatggtttgtgattttttgggagatgataatggaaccaatttagagaataa |
70 |
Q |
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| T |
18421718 |
tgtaagggtttgtgactttt-gggagatgataatggaatcaatttagaaaataa |
18421666 |
T |
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