View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1185_low_18 (Length: 399)
Name: NF1185_low_18
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 98 - 389
Target Start/End: Original strand, 24561186 - 24561477
Alignment:
| Q |
98 |
attatgtgcctgagacatatagtttgtttaattcattcgtgggagcaaattgcaggactgatcatggaagaccatagccaaggcaaatgaatcacacata |
197 |
Q |
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| T |
24561186 |
attatgtgcctgagacatatagtttgtttaattcattcgtgggagcaaattgcaggactgatcatggaagaccatagccaaggcaaatgaatcacacata |
24561285 |
T |
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| Q |
198 |
ttgatgagcagagtactaattatgaccaggtgatagtttgaataaattgacagtcattcttgtggtcttgctgaaagaacaaagaaggaacttaaacaga |
297 |
Q |
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| T |
24561286 |
ttgatgagcagagtactaattatgaccaggtgatagtttgaataaattgacagtcattgttgtggtcttgctgaaagaacgaagaaggaacttaaacaga |
24561385 |
T |
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| Q |
298 |
tgtatgcctttggtttatattaagttacttcaaacaataagagattaggatatcaatacagtctcaaggctaaatatattgcagatcctttg |
389 |
Q |
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| T |
24561386 |
tgtatgcctttggtttatattaagttacttcaaacaataagagattaggatatcaatacagtctcaaggctaattatattgcagatcctttg |
24561477 |
T |
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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 296 - 389
Target Start/End: Complemental strand, 37223917 - 37223824
Alignment:
| Q |
296 |
gatgtatgcctttggtttatattaagttacttcaaacaataagagattaggatatcaatacagtctcaaggctaaatatattgcagatcctttg |
389 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| || ||||| |||||||| ||||| ||||||||| ||| ||||||||| |
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| T |
37223917 |
gatgtatgcctttggtttatattaagttatctcaaacaataagagactatgatatgaatacagtgtcaagactaaatatactgctgatcctttg |
37223824 |
T |
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