View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1185_low_2 (Length: 823)
Name: NF1185_low_2
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 734; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 734; E-Value: 0
Query Start/End: Original strand, 29 - 816
Target Start/End: Original strand, 29295246 - 29296028
Alignment:
| Q |
29 |
atttataacagcaccaattagcacatatattagttttgttaatgtttttggaataattcaaatttctgaaattccttaatctgatgaagtcttttggagc |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29295246 |
atttataacagcaccaattagcacatatattagttttgttaatgtttttggaataattcaaatttctgaaattccttaatctgatgaagtcttttggagc |
29295345 |
T |
|
| Q |
129 |
ctctccaagtagatgcttttttgtcattgaccatgatgataatttcctcaaaactccaagtaagaatcaatatttttattccctttagtttctttaattt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29295346 |
ctctccaagtagatgcttttttgtcattgaccatgatgataatttcctcaaaactccaagtaagaatcaatatttttattccctttagtttctttaattt |
29295445 |
T |
|
| Q |
229 |
catcaaatcatataccaataacaaattaaaaggttttgttttgtgtttatagcagataaagaaaactcaaagagggattgcacaagaagggaaagaagca |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29295446 |
catcaaatcatataccaataacaaattaaaaggttttgttttgtgtttatagcagataaagaaaactcaaagagggattgcacaagaaaggaaagaagca |
29295545 |
T |
|
| Q |
329 |
gttttgcatatagtattcatgaacatggtaactcatagtttagatatcacattgatttatatttcaattcgaggttttaaatttcagtcacggttatgat |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29295546 |
gttttgcatatagtattcatgaacatggtaactcatagtttagatatcacattgatttatatttcaattcgaggttttaaatttcagtcacggttatgat |
29295645 |
T |
|
| Q |
429 |
tatgtcactatctttgatattacggaaaattattgttgatgtgcaattgtgattgcaaatatgtagcactgacacttcacatagaaggcgtttctaaatt |
528 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29295646 |
tatgtcacta------atattacggaaaattattgttgatgtgcaactgtgattgcaaatatgtagcactgacacttcacatagaaggcgtttctaaatt |
29295739 |
T |
|
| Q |
529 |
taattatttcattctttttccaagttattacaatgtgccagtatcaaatatttgtgtctttgtttcattcgtgattaaacgtggttgcagaaatctcaaa |
628 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29295740 |
taattatttcattctttttccaagttattacaacgtgccagtatcaaatattcgtgtctttgtttcattcgtgattaaacgtggttgcagaaatctcaaa |
29295839 |
T |
|
| Q |
629 |
aaccttgacattgcagccaaagt-agcggttgcggacctttattataaaaccttgctcacaatgtgttgtcttatgattgcagtgaaattaggtcctaaa |
727 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29295840 |
aaccttgacattgcagccaaagtaagcggttgcggacctttattataaaaccttgctcacaatgtgttgtcttatgattgcagtgaaattaggtcctaaa |
29295939 |
T |
|
| Q |
728 |
ttttctaagactttgaagggtaagttaagtttaggtgccaaaattattcaagaaggtggaagaggtaacattttcaagcatattgttgg |
816 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29295940 |
ttttctgagactttgaagggtaagttaagtttaggtgccaaaattattcaagaaggtggaagaggtaacattttcaagcatatttttgg |
29296028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 704 - 816
Target Start/End: Complemental strand, 42395607 - 42395495
Alignment:
| Q |
704 |
attgcagtgaaattaggtcctaaattttctaagactttgaagggtaagttaagtttaggtgccaaaattattcaagaaggtggaagaggtaacattttca |
803 |
Q |
| |
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|||||||| ||| ||||||||||| | || ||||| ||||||||||||| ||||| ||||| | || || ||||||||||| ||||| |||||||||| |
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| T |
42395607 |
attgcagtaaaactaggtcctaaactatcagagactctgaagggtaagttgagtttgggtgcaaggataatacaagaaggtgggagagggaacattttca |
42395508 |
T |
|
| Q |
804 |
agcatattgttgg |
816 |
Q |
| |
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|| ||||| |||| |
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| T |
42395507 |
agaatatttttgg |
42395495 |
T |
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