View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1185_low_21 (Length: 375)
Name: NF1185_low_21
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_low_21 |
 | |
|
| [»] scaffold0158 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 30 - 368
Target Start/End: Original strand, 5559331 - 5559668
Alignment:
| Q |
30 |
taacgctcaaaacacaacacaaaaatcacttttctacaacatgaaatgtcatttctagcttggttttgctacaaaagtgaaataggtaatggtgggagtg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5559331 |
taacgctcaaaacacaacacaaaaatcacttttctacaacatgaaatgtcatttctagcttggttttgctacaaaagtgaaataggtaatggtgggagtg |
5559430 |
T |
|
| Q |
130 |
aaagaaaggaacacgtgagggatggggaagagagaagagggaggttctgattttttgtgagagaagagtgtagaagaatgtggaaannnnnnnagtttta |
229 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5559431 |
aaagaaaggaacacgtgagggagagggaagagagaagagggaggttctgattttttgtgagagaagagtgtagaagaatgtggaaa-ttttttagtttta |
5559529 |
T |
|
| Q |
230 |
ttctatttgtacctttttatgtaaatgaccaatttgcccttttcatactattcttcaaactaaaatatccgattaaatgtcgtaaaagttttaagcggca |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5559530 |
ttctatttgtacctttttatgtaaatgaccaatttgcccttttcatactattcttcaaactaaaatatccgattaaatgtcgtaaaagttttaagcggca |
5559629 |
T |
|
| Q |
330 |
aattccattctcaatagtccgttggaataatattattcg |
368 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
5559630 |
aattccattctcaatagtccgttgaaataatatgattcg |
5559668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 30 - 368
Target Start/End: Original strand, 41529960 - 41530303
Alignment:
| Q |
30 |
taacgctcaaaacacaacacaaaaatcacttttctacaacatgaaatgtcatttctagcttggttttgctacaaaagtgaaataggtaatggtgggagtg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41529960 |
taacgctcaaaacacaacacaaaaatcacttttctacaacatgaaatgtcatttctagcttggttttgctacaaaagtgaaataggtaatggtgggagtg |
41530059 |
T |
|
| Q |
130 |
aaagaaaggaacacgtgag---ggatggggaagagagaagagggaggttctga---ttttttgtgagagaagagtgtagaagaatgtggaaannnnnnna |
223 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41530060 |
aaagaaaggaacacgtgagggaggagggggaagagagaagagggaggttctgatttttttttgtgagagaagagtgtagaagaatgtggaaa-tttttta |
41530158 |
T |
|
| Q |
224 |
gttttattctatttgtacctttttatgtaaatgaccaatttgcccttttcatactattcttcaaactaaaatatccgattaaatgtcgtaaaagttttaa |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41530159 |
gttttattctatttgtacctttttatgtaaatgaccaatttgcccttttcatactattcttcaaactaaaatatccgattaaatgtcgtaaaagttttaa |
41530258 |
T |
|
| Q |
324 |
gcggcaaattccattctcaatagtccgttggaataatattattcg |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41530259 |
gcggcaaattccattctcaatagtccgttggaataatatgattcg |
41530303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 34 - 215
Target Start/End: Complemental strand, 37367608 - 37367428
Alignment:
| Q |
34 |
gctcaaaacacaacacaaaaatcacttttctacaacatgaaatgtcatttctagcttggttttgctacaaaagtgaaataggtaatggtgggagtgaaag |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37367608 |
gctcaaaacacaacacaaaaatcacttttctacaacttgaaatgtcatttctagcttgattttgctacaaaagtgaaataggtaatggtgggagtgaaag |
37367509 |
T |
|
| Q |
134 |
aaaggaacacgtgagggatggggaagagagaagagggaggttctgattttttgtgagagaagagtgtagaagaatgtggaaa |
215 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
37367508 |
aaaggaacacgtgagagagggggaagagagaagagggatgttctgat-ttttgtgagagaagagtgtagaaaaatgtggaaa |
37367428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 223 - 369
Target Start/End: Complemental strand, 37366897 - 37366751
Alignment:
| Q |
223 |
agttttattctatttgtacctttttatgtaaatgaccaatttgcccttttcatactattcttcaaactaaaatatccgattaaatgtcgtaaaagtttta |
322 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37366897 |
agttttgttctatttgtacctttttatgtaaatgcccaatttgcccttttcatgctattcttcaaactaaaatatccgattaaatgtcgtaaaagttcta |
37366798 |
T |
|
| Q |
323 |
agcggcaaattccattctcaatagtccgttggaataatattattcga |
369 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37366797 |
agcggaaaattccattctcaatagtccgttggaataatatgattcga |
37366751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 30 - 368
Target Start/End: Complemental strand, 19357865 - 19357526
Alignment:
| Q |
30 |
taacgctcaaaacacaacacaaaaatcacttttctacaacatgaaatgtcatttctagcttggttttgctacaaaagtgaaataggtaatggtgggagtg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19357865 |
taacgctcaaaacacaacacaaaaatcacttttctacaacatgaaatgtcatttctagcttggttttgctacaaaagtgaaataggtaat-gtgggagtg |
19357767 |
T |
|
| Q |
130 |
aaagaaaggaacacgtgagggatggggaagagagaagagggaggttctga-ttttttgtgagagaagagtgtagaagaatgtggaaa-nnnnnnnagttt |
227 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19357766 |
aaagaaaggaacacgtgagggagggggaagagagaagagggaggttctgatttttttgtgagagaagagtgtagaagaatgtggaaattttttttagttt |
19357667 |
T |
|
| Q |
228 |
tattctatttgtacctttttatgtaaatgaccaatttgcccttttcatactattcttcaaactaaaatatccgattaaatgtcgtaaaagttttaagcgg |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19357666 |
tattctatttgtacctttttatgtaaatgaccaatttgccctttgcatactattcttcaaactaaaatatccaattaaatgtcgtaaaagttttaagcgg |
19357567 |
T |
|
| Q |
328 |
caaattccattctcaatagtccgttggaataatattattcg |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19357566 |
caaattccattctcaatagtccgttggaataatatgattcg |
19357526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 324
Target Start/End: Complemental strand, 14529231 - 14529158
Alignment:
| Q |
252 |
aaatgaccaatttgcccttttc-atactattcttcaaactaaaatatccgattaaatgtcgtaaaagttttaag |
324 |
Q |
| |
|
|||||||||| |||||||||| | ||| |||||||||||| |||||||||| |||| |||||||||||||||| |
|
|
| T |
14529231 |
aaatgaccaaaatgcccttttctacactcttcttcaaactagaatatccgataaaatatcgtaaaagttttaag |
14529158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 34 - 368
Target Start/End: Complemental strand, 2694634 - 2694304
Alignment:
| Q |
34 |
gctcaaaacacaacacaaaaatcacttttctacaacatgaaatgtcatttctagcttggttttgctacaaaagtgaaataggtaatggtgggagtgaaag |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2694634 |
gctcaaaacacaacacaaaaatcacttttctacaacatgaaatgtcatttctagcttgattttgctacaaaagtgaaataggtaatggtgggagtgaaag |
2694535 |
T |
|
| Q |
134 |
aaaggaacacgtgagggatggggaagagagaagagggaggttctgattttttgtgagagaagagtgtagaagaatgtggaaannnnnnnagttttattct |
233 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||| |||||| |||| |
|
|
| T |
2694534 |
aaaggaacacctgagggagggggaagagagaagagggaggttctgat-ttttgtgagag-agagtgtagaaaaatgtggaaa--attttagttttgttct |
2694439 |
T |
|
| Q |
234 |
atttgtacctttttatgtaaatgaccaatttgcccttttcatactattcttcaaactaaaatatccgattaaatgtcgtaaaagttttaagcggcaaatt |
333 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2694438 |
atttgtacctttttatgcaaatgaccaatttgcccttttcatactattcttcaaactaaaatatccgattaaatgtcgtaaaagttttaagcggcaaatt |
2694339 |
T |
|
| Q |
334 |
ccattctcaatagtccgttggaataatattattcg |
368 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
2694338 |
ccattctcaatagtctgttggaataatatgattcg |
2694304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 280 - 362
Target Start/End: Original strand, 13714702 - 13714784
Alignment:
| Q |
280 |
ttcttcaaactaaaatatccgattaaatgtcgtaaaagttttaagcggcaaattccattctcaatagtccgttggaataatat |
362 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||| | ||| ||||||| |||||| |||| |||||||| |
|
|
| T |
13714702 |
ttcttcaaactaaaatatccgataaaatatcgtaaaagttttaagcgaaatatttcattctccatagtctgttgaaataatat |
13714784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 4222311 - 4222390
Alignment:
| Q |
283 |
ttcaaactaaaatatccgattaaatgtcgtaaaagttttaagcggcaaattccattctcaatagtccgttggaataatat |
362 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||| | ||| |||| || |||||| |||| |||||||| |
|
|
| T |
4222311 |
ttcaaactaaaatatccgataaaatatcgtaaaagttttaagcgaaatatttcattttccatagtctgttgaaataatat |
4222390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 280 - 326
Target Start/End: Original strand, 1507833 - 1507879
Alignment:
| Q |
280 |
ttcttcaaactaaaatatccgattaaatgtcgtaaaagttttaagcg |
326 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
1507833 |
ttcttcaaactaaaatatccgataaaatatcgtaaaagttttaagcg |
1507879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 362
Target Start/End: Original strand, 19804205 - 19804304
Alignment:
| Q |
264 |
tgcccttttc-atactattcttcaaactaaaatatccgattaaatgtcgtaaaagttttaagcggcaaattccattctcaatagtccgttggaataatat |
362 |
Q |
| |
|
|||||||||| | ||| |||||||||||| |||||||||| |||| |||||||||||||||||| | | | ||||| | ||||||||||| |||||||| |
|
|
| T |
19804205 |
tgcccttttctacactcttcttcaaactagaatatccgataaaatatcgtaaaagttttaagcgaaatacttcattccccatagtccgttgaaataatat |
19804304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 12493 - 12430
Alignment:
| Q |
264 |
tgcccttttc-atactattcttcaaactaaaatatccgattaaatgtcgtaaaagttttaagcg |
326 |
Q |
| |
|
|||||||||| | ||| |||||||||||| |||||||||| |||| |||||||||||||||||| |
|
|
| T |
12493 |
tgcccttttctacactcttcttcaaactagaatatccgataaaatatcgtaaaagttttaagcg |
12430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 28146709 - 28146788
Alignment:
| Q |
283 |
ttcaaactaaaatatccgattaaatgtcgtaaaagttttaagcggcaaattccattctcaatagtccgttggaataatat |
362 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||||||||||||| | ||| ||||| | ||||||||||| |||||||| |
|
|
| T |
28146709 |
ttcaaactagaatatccgataaaatatcgtaaaagttttaagcaaaatatttcattccccatagtccgttgaaataatat |
28146788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 5129398 - 5129299
Alignment:
| Q |
264 |
tgcccttttc-atactattcttcaaactaaaatatccgattaaatgtcgtaaaagttttaagcggcaaattccattctcaatagtccgttggaataatat |
362 |
Q |
| |
|
|||||||||| | ||| |||||||||| |||||||||||| |||| || ||||| ||||||||| | ||| ||||| | |||||| |||| |||||||| |
|
|
| T |
5129398 |
tgcccttttctacactcttcttcaaaccaaaatatccgataaaatatcataaaaattttaagcgaaatatttcattccccatagtctgttgaaataatat |
5129299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 26618825 - 26618762
Alignment:
| Q |
264 |
tgcccttttc-atactattcttcaaactaaaatatccgattaaatgtcgtaaaagttttaagcg |
326 |
Q |
| |
|
|||||||||| | ||| ||||||||||||||||||||||| |||| ||||||| ||||||||| |
|
|
| T |
26618825 |
tgcccttttctacactcttcttcaaactaaaatatccgataaaatatcgtaaatattttaagcg |
26618762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 26724736 - 26724673
Alignment:
| Q |
264 |
tgcccttttc-atactattcttcaaactaaaatatccgattaaatgtcgtaaaagttttaagcg |
326 |
Q |
| |
|
|||||||||| | ||| ||||||||||||||||||||||| |||| ||||||| ||||||||| |
|
|
| T |
26724736 |
tgcccttttctacactcttcttcaaactaaaatatccgataaaatatcgtaaatattttaagcg |
26724673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 322
Target Start/End: Complemental strand, 5248311 - 5248269
Alignment:
| Q |
280 |
ttcttcaaactaaaatatccgattaaatgtcgtaaaagtttta |
322 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||| |||| |
|
|
| T |
5248311 |
ttcttcaaactaaaatatccggtaaaatgtcgtaaaagattta |
5248269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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