View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1185_low_24 (Length: 361)

Name: NF1185_low_24
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1185_low_24
NF1185_low_24
[»] chr8 (2 HSPs)
chr8 (139-274)||(36378261-36378394)
chr8 (142-264)||(4878389-4878509)
[»] chr2 (2 HSPs)
chr2 (139-274)||(31488140-31488273)
chr2 (139-274)||(39817043-39817179)
[»] chr4 (3 HSPs)
chr4 (139-274)||(13775536-13775669)
chr4 (142-264)||(42469435-42469555)
chr4 (137-241)||(33246118-33246220)
[»] chr7 (4 HSPs)
chr7 (142-274)||(42679574-42679704)
chr7 (142-264)||(3933993-3934113)
chr7 (137-253)||(21767882-21767996)
chr7 (137-198)||(19788213-19788274)
[»] chr5 (1 HSPs)
chr5 (139-271)||(11850985-11851115)
[»] chr3 (1 HSPs)
chr3 (139-274)||(4532220-4532354)
[»] chr1 (2 HSPs)
chr1 (137-253)||(4820152-4820266)
chr1 (137-253)||(4831952-4832066)
[»] chr6 (1 HSPs)
chr6 (97-253)||(20643037-20643197)
[»] scaffold0050 (1 HSPs)
scaffold0050 (137-271)||(30621-30753)


Alignment Details
Target: chr8 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 139 - 274
Target Start/End: Original strand, 36378261 - 36378394
Alignment:
Q  139 aacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatcgg 238  Q
    |||||||||| ||||||||||||| ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||  ||||||| | | |||    
T  36378261 aacctccaaagattcaccatattcagcaggaatatattttttgtcatatattggttcatcatgctcctctttttcaaaggctt--catgaatgttaccgg 36378358  T
Q  239 gaccatagtcatcatatattggatctccttttccct 274  Q
    ||||||| ||||||||||||||||||||||||||||    
T  36378359 gaccatattcatcatatattggatctccttttccct 36378394  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 142 - 264
Target Start/End: Complemental strand, 4878509 - 4878389
Alignment:
Q  142 ctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatcgggac 241  Q
    ||||||| ||||||||||||| ||| ||| |||| |||| |||||||||||||||| ||||||||| |||||||||||||  ||||||| |||||| |||    
T  4878509 ctccaaatattcaccatattcagcaagaacatattcttcatcatatattggttcattatgctcctccttttcaaaggctt--catgaatgtcatcgagac 4878412  T
Q  242 catagtcatcatatattggatct 264  Q
    |||  ||||||||||||||||||    
T  4878411 cattttcatcatatattggatct 4878389  T

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Target: chr2 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 139 - 274
Target Start/End: Complemental strand, 31488273 - 31488140
Alignment:
Q  139 aacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatcgg 238  Q
    |||||||||| ||||||||||||| ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||  ||||||| | | |||    
T  31488273 aacctccaaagattcaccatattcagcaggaatatattttttgtcatatattggttcatcatgctcctctttttcaaaggctt--catgaatgttaccgg 31488176  T
Q  239 gaccatagtcatcatatattggatctccttttccct 274  Q
    ||||||| ||||||||||||||||||||||||||||    
T  31488175 gaccatattcatcatatattggatctccttttccct 31488140  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 274
Target Start/End: Original strand, 39817043 - 39817179
Alignment:
Q  139 aacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatcgg 238  Q
    |||||||||| ||||||||||||   | |||| || | |||||||||||||||| || | || |||||||||||||||   ||  ||||||| |||||||    
T  39817043 aacctccaaatattcaccatattaaactggaagatgttcttcgtcatatattggctcgttattctcctctttttcaaacaatt--catgaatgtcatcgg 39817140  T
Q  239 gaccatagt---catcatatattggatctccttttccct 274  Q
    || |||| |   ||||||||||||||| | |||||||||    
T  39817141 gaacatattcaacatcatatattggattttcttttccct 39817179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 139 - 274
Target Start/End: Complemental strand, 13775669 - 13775536
Alignment:
Q  139 aacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatcgg 238  Q
    |||||||||| ||||||||||||| ||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||  ||||||| | | | |    
T  13775669 aacctccaaagattcaccatattcagcatgaatatatttttcgtcatatattggttcatcatgctcctctttttcaaaggctt--catgaatgttaccag 13775572  T
Q  239 gaccatagtcatcatatattggatctccttttccct 274  Q
    ||||||| ||||||||||||||||||||||||||||    
T  13775571 gaccatattcatcatatattggatctccttttccct 13775536  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 142 - 264
Target Start/End: Original strand, 42469435 - 42469555
Alignment:
Q  142 ctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatcgggac 241  Q
    ||||||| ||||||||||||| ||| ||| |||| ||||||||||||||||||| ||||||||||||||||| || ||||  ||||||| ||||||||||    
T  42469435 ctccaaatattcaccatattcagcaagaacatattcttcgtcatatattggttcgtcatgctcctctttttccaatgctt--catgaatgtcatcgggac 42469532  T
Q  242 catagtcatcatatattggatct 264  Q
    |||| ||||||||||||||||||    
T  42469533 catattcatcatatattggatct 42469555  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 33246220 - 33246118
Alignment:
Q  137 ttaacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatc 236  Q
    ||||||||  || ||| ||||||||| ||| |||||||| |||||||||||||||| |  ||||||||||||||||||||| |||  ||||||| |||||    
T  33246220 ttaacctctcaagatttaccatattcagcaagaatatattcttcgtcatatattgggttgtcatgctcctctttttcaaagactt--catgaatgtcatc 33246123  T
Q  237 gggac 241  Q
    |||||    
T  33246122 gggac 33246118  T

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Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 142 - 274
Target Start/End: Original strand, 42679574 - 42679704
Alignment:
Q  142 ctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatcgggac 241  Q
    ||||||| ||||||||||||| ||| ||| |||| ||||||||||||||||||| ||||||||||||||||| || ||||  ||||||| ||||||||||    
T  42679574 ctccaaatattcaccatattcagcaagaacatattcttcgtcatatattggttcgtcatgctcctctttttccaatgctt--catgaatgtcatcgggac 42679671  T
Q  242 catagtcatcatatattggatctccttttccct 274  Q
    |||| ||||||||||||||||||||||||||||    
T  42679672 catattcatcatatattggatctccttttccct 42679704  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 142 - 264
Target Start/End: Complemental strand, 3934113 - 3933993
Alignment:
Q  142 ctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatcgggac 241  Q
    ||||||| ||||||||||||| ||| ||| |||| |||| |||||||||||||||| ||||||||| |||||||||||||  ||||||| |||||| |||    
T  3934113 ctccaaatattcaccatattcagcaagaacatattcttcatcatatattggttcattatgctcctccttttcaaaggctt--catgaatgtcatcgagac 3934016  T
Q  242 catagtcatcatatattggatct 264  Q
    |||  ||||||||||||||||||    
T  3934015 cattttcatcatatattggatct 3933993  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 253
Target Start/End: Original strand, 21767882 - 21767996
Alignment:
Q  137 ttaacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatc 236  Q
    |||||||||||| |||| |||||||| ||||||| |||| ||||||||||||||||||| |||| |||||||||||||||  |||  ||||||| |||||    
T  21767882 ttaacctccaaagattctccatattcagcaggaagatattcttcgtcatatattggttcgtcattctcctctttttcaaacactt--catgaatgtcatc 21767979  T
Q  237 gggaccatagtcatcat 253  Q
     |||||||| |||||||    
T  21767980 aggaccatattcatcat 21767996  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 19788274 - 19788213
Alignment:
Q  137 ttaacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatc 198  Q
    |||||||||||| ||||||||||||| ||| ||| |||| |||| |||||||||| ||||||    
T  19788274 ttaacctccaaagattcaccatattcagcaagaacatattcttcatcatatattgattcatc 19788213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 139 - 271
Target Start/End: Original strand, 11850985 - 11851115
Alignment:
Q  139 aacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatcgg 238  Q
    |||||||||| ||||||||||||| ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||  ||||||| | | ||     
T  11850985 aacctccaaagattcaccatattcagcaggaatatattttttgtcatatattggttcatcatgctcctctttttcaaaggctt--catgaatgttaccga 11851082  T
Q  239 gaccatagtcatcatatattggatctccttttc 271  Q
    ||||||| |||||||||||||||||||||||||    
T  11851083 gaccatattcatcatatattggatctccttttc 11851115  T

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Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 139 - 274
Target Start/End: Complemental strand, 4532354 - 4532220
Alignment:
Q  139 aacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatat-catcg 237  Q
    |||||||||| ||||||||||||| ||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||  ||||| | || |     
T  4532354 aacctccaaagattcaccatattcagcatgaatatatttttcgtcatatattggttcatcatgctcctctttttcaaaggcttca--tgaatgttcacca 4532257  T
Q  238 ggaccatagtcatcatatattggatctccttttccct 274  Q
    |||||||| ||||||||||||||||||||||||||||    
T  4532256 ggaccatattcatcatatattggatctccttttccct 4532220  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 253
Target Start/End: Complemental strand, 4820266 - 4820152
Alignment:
Q  137 ttaacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatc 236  Q
    |||||||||||| |||| |||||||| ||||||| ||||  |||||| ||||||||||  |||| |||||||||||||||  |||  ||||||| |||||    
T  4820266 ttaacctccaaagattcgccatattcagcaggaagatattattcgtcgtatattggtttgtcattctcctctttttcaaacactt--catgaatgtcatc 4820169  T
Q  237 gggaccatagtcatcat 253  Q
    ||||||||| |||||||    
T  4820168 gggaccatactcatcat 4820152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 253
Target Start/End: Complemental strand, 4832066 - 4831952
Alignment:
Q  137 ttaacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatc 236  Q
    |||||||||||| |||| |||||||| ||||||| ||||  |||||| ||||||||||  |||| |||||||||||||||  |||  ||||||| |||||    
T  4832066 ttaacctccaaagattcgccatattcagcaggaagatattattcgtcgtatattggtttgtcattctcctctttttcaaacactt--catgaatgtcatc 4831969  T
Q  237 gggaccatagtcatcat 253  Q
    ||||||||| |||||||    
T  4831968 gggaccatactcatcat 4831952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 97 - 253
Target Start/End: Complemental strand, 20643197 - 20643037
Alignment:
Q  97 tcctagccatggttgttttttagctgccattgtttgcaag------ttaacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatatt 190  Q
    |||||||||||||| || ||| |||||  |||||||||||      ||||||||| || ||| |||||||||  || |||||||| |||| |||||||||    
T  20643197 tcctagccatggttcttctttggctgctgttgtttgcaagctttttttaacctcccaagatttaccatattcaacaagaatatattcttcatcatatatt 20643098  T
Q  191 ggttcatcatgctcctctttttcaaaggcttcacatgaatatcatcgggaccatagtcatcat 253  Q
    ||||  |||||||||||||| |||||| |||  ||||||| |||||||||||||  |||||||    
T  20643097 ggtttgtcatgctcctctttgtcaaagactt--catgaatgtcatcgggaccatgttcatcat 20643037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 271
Target Start/End: Complemental strand, 30753 - 30621
Alignment:
Q  137 ttaacctccaaaaattcaccatattcggcaggaatatatccttcgtcatatattggttcatcatgctcctctttttcaaaggcttcacatgaatatcatc 236  Q
    |||||||||||| |||||||||||||  || ||| |||| |||||||||| |||||||| ||||  || ||||||||||   |||  ||||||| |||||    
T  30753 ttaacctccaaagattcaccatattcaacatgaagatattcttcgtcatacattggttcttcattatcatctttttcaataactt--catgaatgtcatc 30656  T
Q  237 gggaccatagtcatcatatattggatctccttttc 271  Q
    | || |||| |||| ||||||||||||||||||||    
T  30655 gagaacatattcattatatattggatctccttttc 30621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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