View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1185_low_25 (Length: 351)
Name: NF1185_low_25
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 3 - 320
Target Start/End: Original strand, 47538711 - 47539028
Alignment:
| Q |
3 |
catctccaacaatatcaactttcctaatcatctctttacactcttcaatcttattcccttcacttaatcccaaagaacaaagtaccaaagctagctcctc |
102 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47538711 |
catctccatccatatcaactttcctaatcatctctttacactcttcaatcttattcccttcacttaatcccaaagaacaaagtaccaaagctagctcctc |
47538810 |
T |
|
| Q |
103 |
cactgaaattaacccatcattatctttgtcaaacacatcaaaagcctcctttaaattagcctctaattcttccaattcatcttccttactaccaacacca |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47538811 |
cactgaaattaacccatcattatctttgtcaaacacatcaaaagcctcctttaaattagcctctaattcttccaattcatcttccttactaccaacacca |
47538910 |
T |
|
| Q |
203 |
ccttctttctctccttcacctcctcccataaactcactagtcaacaaacaaaactcatcaaaatcaatcaactcatctccattagaatcaaacttgccaa |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47538911 |
ccttctttctctccttcacctcctcccataaactcactagtcaacaaacaaaactcatcaaaatcaatcaactcatctccattagaatcaaacttgccaa |
47539010 |
T |
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| Q |
303 |
caatatcatcaatctctt |
320 |
Q |
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|||||||||||||||||| |
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| T |
47539011 |
caatatcatcaatctctt |
47539028 |
T |
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