View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1185_low_27 (Length: 349)
Name: NF1185_low_27
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_low_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 77 - 349
Target Start/End: Original strand, 29010604 - 29010868
Alignment:
| Q |
77 |
gaagcgaaaacctgacacgccaccccacagcaacaatatctaatttggaatggaaattggtgatctaagaaagtaagaataccaccaacaacgtggttgt |
176 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29010604 |
gaagcgaaaacctgacacgccaccccacagcaacaatatctaatttggaatggaaattggtgatctaag--------aataccaccaacaacgtggttgt |
29010695 |
T |
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| Q |
177 |
gcttcaataacagtagagtgcttgaaaggcttcaacatatccattgtgtggataattccttccattaagtacccgacataacccacgtcccacattcagt |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29010696 |
gcttcaataacagtagagtgcttgaaaggcttcaacatatccattgtgtggataattccttccattaagtacccgacataacccacgtcccacattcagt |
29010795 |
T |
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| Q |
277 |
caagatattggtacctggaagaattttaaggaatgacttctattagtggccaacaatttctgcagaaagttac |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29010796 |
caagatattggtacctggaagaattttaaggaatgacttctattagtggccaacaagttctgcagaaagttac |
29010868 |
T |
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