View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1185_low_3 (Length: 771)
Name: NF1185_low_3
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 654; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 30 - 765
Target Start/End: Complemental strand, 31945388 - 31944654
Alignment:
| Q |
30 |
ccagcgacgctcgtggagttcacattaaacggtgctaatggactagatttctacgatgtaagcctagtcgacggttacaaccttcccataacagtggaac |
129 |
Q |
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| T |
31945388 |
ccagcgacgctcgcggagttcacattaaacggtgctaatggactagatttctacgacgtcagcctagtcgacggttacaaccttcccataacagtggaac |
31945289 |
T |
|
| Q |
130 |
caagtggcggcggtggaaactgcacgaccacgggctgtttagtggacttaaacggcgcgtgtccgacagaactaaaggtgaaaattgcggcggaaggtga |
229 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31945288 |
caagtggcggcagtggaaactgcacgactacgggctgtttagtagacttaaatggcgcgtgtccgacagaactaaaggtgaaaattgcggcggaagaaga |
31945189 |
T |
|
| Q |
230 |
agggagtgatgaaaagagcgtggcgtgtaaaagcgcgtgtgaagcctttggtgatccattgtattgttgcaatggcgcttatggaactccgcagacttgt |
329 |
Q |
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| T |
31945188 |
agggagtgatgaaaagagcgtggcatgtaaaagcgcgtgcgaagcctttggtgatccattgtattgttgcaatggcgcttatggaactccgcagacttgt |
31945089 |
T |
|
| Q |
330 |
aagccaagttcatactcgcagttcttcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatggaactagcaccttcacctgttcctctgcag |
429 |
Q |
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| T |
31945088 |
aagccaagttcatactcgcagttcttcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatggaactagcaccttcacttgttcctctgcag |
31944989 |
T |
|
| Q |
430 |
attacctcattactttctgttctacacattccaaagggtattgtattgtagttcaatcttctgattttttgttttaagtagaaaatnnnnnnntaactag |
529 |
Q |
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| T |
31944988 |
attacctcattactttctgttctacacattccaaagggtattgtattgtagttcaatcttctgattttttgttttaagtagaaaat-aaaaaataactag |
31944890 |
T |
|
| Q |
530 |
aaatgtatttgagtgcatgcagttcgatcaagtcagggaccggaaaactcccgtttggagtggacatttgggcaggacaagcccatggccatgctgataa |
629 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31944889 |
aaatgtatttgagtgcatgcagttcgatcaagtcagggaccggaaaactcccgtttggagtggacatttgggcaggacacgcccatggccatgctgataa |
31944790 |
T |
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| Q |
630 |
gtcaaccaaggggatgtctctagttgtggcagcagttttcatgacaatttggtggcagctcagttaggcgtgcggatttagattccatgcagttattgat |
729 |
Q |
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| T |
31944789 |
gtcaaccaaggggatgtctctagttgtggcagcagttttcatgacaatttggtggcagctcagttaggcgtgcggatttaaattccatgcagttattgat |
31944690 |
T |
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| Q |
730 |
tttgatcgtctagtagtttgtttgtttctgtggtgc |
765 |
Q |
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| T |
31944689 |
tttgatcgtctagtagtttgtttgtttctgtggtgc |
31944654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 252 - 409
Target Start/End: Complemental strand, 14039453 - 14039296
Alignment:
| Q |
252 |
gcgtgtaaaagcgcgtgtgaagcctttggtgatccattgtattgttgcaatggcgcttatggaactccgcagacttgtaagccaagttcatactcgcagt |
351 |
Q |
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||||||||||||||||||||||| ||||| |||||| |||||||| | ||||||||| | |||| | || || ||||||||||||||||| |||| |
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| T |
14039453 |
gcgtgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctccaaatacatgcaagccaagttcatactcacagt |
14039354 |
T |
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| Q |
352 |
tcttcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatggaactagcac |
409 |
Q |
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| T |
14039353 |
ttttcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatgaaacaagcac |
14039296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 252 - 433
Target Start/End: Complemental strand, 18954424 - 18954243
Alignment:
| Q |
252 |
gcgtgtaaaagcgcgtgtgaagcctttggtgatccattgtattgttgcaatggcgcttatggaactccgcagacttgtaagccaagttcatactcgcagt |
351 |
Q |
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||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||| | ||||| | || || ||||||||||| ||||| || | |
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| T |
18954424 |
gcgtgtaaaagcgcgtgtgaagcgtttggagatctgcaatattgttgtaatggcgcttacgctactccagatacatgcaagccaagttcgtactcacaat |
18954325 |
T |
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| Q |
352 |
tcttcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatggaactagcaccttcacctgttcctctgcagatta |
433 |
Q |
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| T |
18954324 |
tctttaagagtgcatgtccacgtgcttatagttatgcttatgatgatggaacaagcactttcgcttgtgcttctgcagatta |
18954243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 239 - 433
Target Start/End: Original strand, 8798164 - 8798358
Alignment:
| Q |
239 |
tgaaaagagcgtggcgtgtaaaagcgcgtgtgaagcctttggtgatccattgtattgttgcaatggcgcttatggaactccgcagacttgtaagccaagt |
338 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||| |||||||||||| | ||| | || ||||| |||||| |
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| T |
8798164 |
tgaagagagcgtggcgtgtaaaagcgcgtgtgaagcgtttggggatccgcaatattgctgcagtggcgcttatggttccccggatacgtgtaaaccaagt |
8798263 |
T |
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| Q |
339 |
tcatactcgcagttcttcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatggaactagcaccttcacctgttcctctgcagatta |
433 |
Q |
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|| ||||||||||| || ||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||| | ||||| ||||| |
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| T |
8798264 |
tcctactcgcagttttttaagagtgcgtgtccacgcgcttatagttacgcttatgatgatggaactagcactttcacttgtgcttctgctgatta |
8798358 |
T |
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