View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1185_low_31 (Length: 327)

Name: NF1185_low_31
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1185_low_31
NF1185_low_31
[»] chr7 (16 HSPs)
chr7 (103-205)||(35939514-35939622)
chr7 (106-227)||(35982198-35982319)
chr7 (106-227)||(36003610-36003731)
chr7 (103-263)||(36221333-36221499)
chr7 (103-218)||(36226068-36226189)
chr7 (104-181)||(36217436-36217513)
chr7 (156-287)||(35973540-35973677)
chr7 (156-287)||(35994952-35995089)
chr7 (103-183)||(35955221-35955301)
chr7 (103-220)||(35958172-35958295)
chr7 (103-207)||(35946967-35947077)
chr7 (103-185)||(35977627-35977709)
chr7 (103-185)||(35999039-35999121)
chr7 (103-161)||(35965680-35965738)
chr7 (111-180)||(29602936-29603005)
chr7 (111-180)||(29750289-29750358)
[»] chr1 (2 HSPs)
chr1 (111-323)||(18125888-18126106)
chr1 (106-142)||(18118239-18118275)
[»] chr4 (2 HSPs)
chr4 (111-162)||(49340545-49340596)
chr4 (111-162)||(49351909-49351960)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 103 - 205
Target Start/End: Original strand, 35939514 - 35939622
Alignment:
Q  103 aacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaactttt------atcaccatcaccgtgaggatgtg 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||    
T  35939514 aacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatcaccatcaccgtgaggatgtg 35939613  T
Q  197 gttgcatca 205  Q
    |||||||||    
T  35939614 gttgcatca 35939622  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 35982198 - 35982319
Alignment:
Q  106 accaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatcaccgtgaggatgtggttgcatca 205  Q
    ||||| ||||||||||| ||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||    
T  35982198 accaattttgcaagtgtagtctttcccaaacctccaattcccacaatgggaataacacataagcttttatcaccatcaccttgaggatgtggtagcatca 35982297  T
Q  206 aacgcttgataatttcttccct 227  Q
    || ||||||||||||| |||||    
T  35982298 aaagcttgataatttcatccct 35982319  T

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Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 36003610 - 36003731
Alignment:
Q  106 accaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatcaccgtgaggatgtggttgcatca 205  Q
    ||||| ||||||||||| ||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||    
T  36003610 accaattttgcaagtgtagtctttcccaaacctccaattcccacaatgggaataacacataagcttttatcaccatcaccttgaggatgtggtagcatca 36003709  T
Q  206 aacgcttgataatttcttccct 227  Q
    || ||||||||||||| |||||    
T  36003710 aaagcttgataatttcatccct 36003731  T

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Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 103 - 263
Target Start/End: Complemental strand, 36221499 - 36221333
Alignment:
Q  103 aacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaactttt------atcaccatcaccgtgaggatgtg 196  Q
    ||||||||| ||||||||||||||||||| || || |||||||| || |||||||||||||| ||| ||||      ||| ||||| || |||||||| |    
T  36221499 aacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataacacacaaatttttgtcaccatctccatctccatgaggatgcg 36221400  T
Q  197 gttgcatcaaacgcttgataatttcttccctgtcacactctctcccgattacacttgaagcgtcaac 263  Q
    ||||||||||| | |||||||||||||||||||||  ||| ||||| || ||||||||||| |||||    
T  36221399 gttgcatcaaaagtttgataatttcttccctgtcattctccctcccaataacacttgaagcatcaac 36221333  T

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Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 36226068 - 36226189
Alignment:
Q  103 aacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcac------catcaccgtgaggatgtg 196  Q
    |||||||| |||||||||||||||||||| || || ||||||||||| |||||||||||||| |||||||||||||      ||||||| ||||||||||    
T  36226068 aacaccaattttgcaagtgtggtcttccccaagccaccaattcccactatgggaataacacacaaacttttatcaccatcagcatcaccttgaggatgtg 36226167  T
Q  197 gttgcatcaaacgcttgataat 218  Q
    | ||||||||| ||||||||||    
T  36226168 gctgcatcaaaagcttgataat 36226189  T

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Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 36217513 - 36217436
Alignment:
Q  104 acaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccat 181  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||    
T  36217513 acaccaattttgcaagtgtggtcttccccaatcctccaattcccactatgggaataacacataaacttctatgaccat 36217436  T

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Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 156 - 287
Target Start/End: Original strand, 35973540 - 35973677
Alignment:
Q  156 aataacacataaacttttatcacc------atcaccgtgaggatgtggttgcatcaaacgcttgataatttcttccctgtcacactctctcccgattaca 249  Q
    ||||||||| ||||||||||||||      |||||| |||||| |||||||||||| | ||||||||||||||||||| |||  ||| ||||| || |||    
T  35973540 aataacacacaaacttttatcaccgtctccatcaccttgaggacgtggttgcatcagaagcttgataatttcttccctatcattctccctcccaataaca 35973639  T
Q  250 cttgaagcgtcaacattgggataagtcatttctctcct 287  Q
    |||||||| || |||| || || ||||| |||||||||    
T  35973640 cttgaagcatcgacatgggaattagtcaattctctcct 35973677  T

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Target: chr7; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 156 - 287
Target Start/End: Original strand, 35994952 - 35995089
Alignment:
Q  156 aataacacataaacttttatcacc------atcaccgtgaggatgtggttgcatcaaacgcttgataatttcttccctgtcacactctctcccgattaca 249  Q
    ||||||||| ||||||||||||||      |||||| |||||| |||||||||||| | ||||||||||||||||||| |||  ||| ||||| || |||    
T  35994952 aataacacacaaacttttatcaccgtctccatcaccttgaggacgtggttgcatcagaagcttgataatttcttccctatcattctccctcccaataaca 35995051  T
Q  250 cttgaagcgtcaacattgggataagtcatttctctcct 287  Q
    |||||||| || |||| || || ||||| |||||||||    
T  35995052 cttgaagcatcgacatgggaattagtcaattctctcct 35995089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 35955221 - 35955301
Alignment:
Q  103 aacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatca 183  Q
    ||||| |||||||||||||||||||| || ||||||||||| || |  |||||||||||||| ||||||||||| ||||||    
T  35955221 aacactaactttgcaagtgtggtctttcccaatcctccaatacctattatgggaataacacacaaacttttatctccatca 35955301  T

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Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 220
Target Start/End: Original strand, 35958172 - 35958295
Alignment:
Q  103 aacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatca------ccgtgaggatgtg 196  Q
    |||||| ||||||||||||| ||||| || || |||||||||||||| || ||||| ||||| | ||| ||||||||||||      ||| |||||||||    
T  35958172 aacaccgactttgcaagtgttgtctttcccaaacctccaattcccactattggaatgacacagagactattatcaccatcaccatctccgcgaggatgtg 35958271  T
Q  197 gttgcatcaaacgcttgataattt 220  Q
    | ||||||||| | ||||||||||    
T  35958272 gctgcatcaaaagattgataattt 35958295  T

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Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 207
Target Start/End: Original strand, 35946967 - 35947077
Alignment:
Q  103 aacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatca------ccgtgaggatgtg 196  Q
    |||||| |||| ||||||||||||||||  || |||||||||||||| || ||||| ||||| | ||| ||||||||||||      |||||||||||||    
T  35946967 aacaccgacttcgcaagtgtggtcttccacaaacctccaattcccactattggaatgacacagagactattatcaccatcaccatcgccgtgaggatgtg 35947066  T
Q  197 gttgcatcaaa 207  Q
    | |||||||||    
T  35947067 gctgcatcaaa 35947077  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 35977627 - 35977709
Alignment:
Q  103 aacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatcacc 185  Q
    |||||| |||||||||  ||||||||||| || |||||||||||||| || ||||| ||||| | ||| ||||||||| ||||    
T  35977627 aacaccgactttgcaatggtggtcttccccaaacctccaattcccactattggaatgacacaaagactattatcaccaccacc 35977709  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 35999039 - 35999121
Alignment:
Q  103 aacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatcacc 185  Q
    |||||| |||||||||  ||||||||||| || |||||||||||||| || ||||| ||||| | ||| ||||||||| ||||    
T  35999039 aacaccgactttgcaatggtggtcttccccaaacctccaattcccactattggaatgacacaaagactattatcaccaccacc 35999121  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 35965680 - 35965738
Alignment:
Q  103 aacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataac 161  Q
    |||||||| |||||||||||||||||||| || || |||||||| |  |||||||||||    
T  35965680 aacaccaagtttgcaagtgtggtcttccccaagccaccaattcctagtatgggaataac 35965738  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 29602936 - 29603005
Alignment:
Q  111 ctttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcacca 180  Q
    |||||||||||| ||||| || || ||||||||||| ||||| ||||||||| | | |||||||| ||||    
T  29602936 ctttgcaagtgtagtctttcccaagcctccaattccaacaataggaataacagagagacttttatgacca 29603005  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 29750358 - 29750289
Alignment:
Q  111 ctttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcacca 180  Q
    |||||||||||| ||||| || || ||||||||||| ||||| ||||||||| | | |||||||| ||||    
T  29750358 ctttgcaagtgtagtctttcccaagcctccaattccaacaataggaataacagagagacttttatgacca 29750289  T

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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 111 - 323
Target Start/End: Original strand, 18125888 - 18126106
Alignment:
Q  111 ctttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatca------ccatcaccgtgaggatgtggttgcatc 204  Q
    |||||| | |||||||||||| || || ||||||||||| |||||||||||| ||| ||||||||||      |||||||| |||||||||| |||||||    
T  18125888 ctttgccaatgtggtcttccccaagccaccaattcccaccatgggaataacagatagacttttatcaccatcaccatcaccatgaggatgtgcttgcatc 18125987  T
Q  205 aaacgcttgataatttcttccctgtcacactctctcccgattacacttgaagcgtcaacattgggataagtcatttctctcctttggactacatgtccgg 304  Q
    ||| |||||||||| |||||||| |||| |||||| || ||||||||  |||| |||||||  |||||||||||||| ||| |||| || |   ||| ||    
T  18125988 aaaagcttgataatctcttccctatcactctctcttcctattacactcaaagcatcaacatcaggataagtcatttccctcttttgcacaatgagtctgg 18126087  T
Q  305 gatcaacattgatggttgc 323  Q
    |||||||||| || |||||    
T  18126088 gatcaacattaatagttgc 18126106  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 18118239 - 18118275
Alignment:
Q  106 accaactttgcaagtgtggtcttccctaatcctccaa 142  Q
    |||||||||||||||||||||||||| ||||||||||    
T  18118239 accaactttgcaagtgtggtcttccccaatcctccaa 18118275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 49340596 - 49340545
Alignment:
Q  111 ctttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataaca 162  Q
    |||||||||||| || || ||||||||||||||||| ||||| |||||||||    
T  49340596 ctttgcaagtgtagtttttcctaatcctccaattccaacaataggaataaca 49340545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 49351960 - 49351909
Alignment:
Q  111 ctttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataaca 162  Q
    |||||||||||| ||||| ||||||||||||||||| ||||  |||||||||    
T  49351960 ctttgcaagtgtagtctttcctaatcctccaattccaacaacaggaataaca 49351909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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