View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1185_low_36 (Length: 320)

Name: NF1185_low_36
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1185_low_36
NF1185_low_36
[»] chr2 (12 HSPs)
chr2 (20-293)||(10457272-10457544)
chr2 (20-320)||(10482805-10483097)
chr2 (20-250)||(10500948-10501175)
chr2 (20-234)||(10512307-10512520)
chr2 (87-277)||(10457546-10457733)
chr2 (20-179)||(10538546-10538703)
chr2 (23-143)||(10467349-10467469)
chr2 (45-193)||(10482555-10482703)
chr2 (23-208)||(7466743-7466926)
chr2 (69-235)||(10483075-10483237)
chr2 (20-102)||(10845341-10845425)
chr2 (78-167)||(9079098-9079187)
[»] chr1 (1 HSPs)
chr1 (24-275)||(24050873-24051114)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 10457272 - 10457544
Alignment:
Q  20 actaacccatcagtaaaagtatcacctgattaaataaagaacatgaaaaaacatactgtcacattaacatttgtttcacctagcagattttattggagac 119  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||     
T  10457272 actaacccatcagtaaaagtatcacctgattaaataatgaacatgaaaaaacatattgtcacattaacatttgttttacctagcatattttgttggagag 10457371  T
Q  120 gaatgtccataaatttgtatgagactggattgtgttttttaatgggatacagaactagagtgttgattttttcacacgcaaaaactggaatcccaataaa 219  Q
    ||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  10457372 gaatgcccataaattggtatgagactggatcgtgttttttaatgggatacagaactagagtgttggttttttcacacacaaaaactggagtcccaataaa 10457471  T
Q  220 agatgttacaaggcaatgtgaacattcattgtttgtagtgacttgcagaaagacttcacacttgtttcatctaa 293  Q
    ||||||||||||||||||||||  ||||||  ||  |||||||||||||||||||||||| |||||||||||||    
T  10457472 agatgttacaaggcaatgtgaaggttcatt-attaaagtgacttgcagaaagacttcacaattgtttcatctaa 10457544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 10482805 - 10483097
Alignment:
Q  20 actaacccatcagtaaaagtatcacctgattaaataaagaacatgaaaaaacatactgtcacattaacatttgtttcacctagcagattttattggagac 119  Q
    ||||||||||| ||||||||||||||||||||||       |||||||||| |||||||||||| | |||||||||||||||||| ||||| || ||||     
T  10482805 actaacccatcggtaaaagtatcacctgattaaa-------catgaaaaaatatactgtcacataagcatttgtttcacctagcatattttgttcgagag 10482897  T
Q  120 gaatgtccataaatttgtatgagactggattgtgttttttaatgggatacagaactagagtgttgattttttcacacgcaaaaactggaatcccaataaa 219  Q
    ||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| ||| ||||||    
T  10482898 gaatgcccataaatttgtacgagactggattgtgtttttaaatgggatacagaactagagtgttggttttttcacacacaaaaactggagtcctaataaa 10482997  T
Q  220 agatgttacaaggcaatgtgaacattcattgtttgtagtgacttgcagaaagacttcacacttgtttcatctaatgtgaacagactgtcacatcaacatt 319  Q
    ||||||||||||||||| ||||||| ||||| ||| || ||||||||||| ||||||||| |||||||||||||||||||||||||||||||  ||||||    
T  10482998 agatgttacaaggcaatttgaacatccattg-ttgaagagacttgcagaaggacttcacatttgtttcatctaatgtgaacagactgtcacactaacatt 10483096  T

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Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 10500948 - 10501175
Alignment:
Q  20 actaacccatcagtaaaagtatcacctgattaaataaagaacatgaaaaaacatactgtcacattaacatttgtttcacctagcagattttattggagac 119  Q
    ||||| ||||||||||||||||||||||||||| | ||||    ||||||||| || ||||||| || ||||||||||||||||| ||||| ||| |||     
T  10500948 actaagccatcagtaaaagtatcacctgattaattgaagac---gaaaaaacagaccgtcacataaagatttgtttcacctagcatattttgttgaagag 10501044  T
Q  120 gaatgtccataaatttgtatgagactggattgtgttttttaatgggatacagaactagagtgttgattttttcacacgcaaaaactggaatcccaataaa 219  Q
    ||||| |  |||||||||||||||||| || ||||| || ||||||| | ||||||||| ||||| |||||||||||  |||||||||| ||||||||||    
T  10501045 gaatgccactaaatttgtatgagactgaatagtgttgttgaatgggagatagaactagattgttggttttttcacacaaaaaaactggagtcccaataaa 10501144  T
Q  220 agatgttacaaggcaatgtgaacattcattg 250  Q
     ||||||| ||| |||||||| |||||||||    
T  10501145 ggatgttaaaagccaatgtgagcattcattg 10501175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 10512307 - 10512520
Alignment:
Q  20 actaacccatcagtaaaagtatcacctgattaaataaagaacatgaaaaaacatactgtcacattaacatttgtttcacctagcagattttattggagac 119  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||| ||||||||| | ||||| ||||||||||||||||| |  || ||||| || |||      
T  10512307 actaatccatcagtaaaagtatcgcctgattaaataatgaacacgaaaaaacagattgtcaaattaacatttgtttcac-tgtcatattttgttcgagtg 10512405  T
Q  120 gaatgtccataaatttgtatgagactggattgtgttttttaatgggatacagaactagagtgttgattttttcacacgcaaaaactggaatcccaataaa 219  Q
    ||||| ||||||||| |||||||| ||||||||||| ||||||||  || ||| ||||||| ||| ||||||||||  ||||||||||| ||||||| ||    
T  10512406 gaatgcccataaattcgtatgagattggattgtgttgtttaatggattatagagctagagtattggttttttcacatacaaaaactggagtcccaatcaa 10512505  T
Q  220 agatgttacaaggca 234  Q
     ||||||||||||||    
T  10512506 ggatgttacaaggca 10512520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 87 - 277
Target Start/End: Original strand, 10457546 - 10457733
Alignment:
Q  87 catttgtttcacctagcagattttattggagacgaatgtccataaatttgtatgagactggattgtgttttttaatgggatacagaactagagtgttgat 186  Q
    |||||||||||||||||| ||||| ||||||| || |  ||||||||| |||||||||||||||||||| |||||||||||  ||| ||||||| ||| |    
T  10457546 catttgtttcacctagcatattttgttggagaggattacccataaattcgtatgagactggattgtgttgtttaatgggat--agacctagagtattgct 10457643  T
Q  187 tttttcacacgcaaaaactggaatcccaataaaagatgttacaaggcaatgtgaacattcattgtttgtagtgacttgcagaaagacttca 277  Q
    |||||||||| ||||||||||| ||| |||||| |||||| |||||||||  ||||||||||||  || ||| ||| ||||||||||||||    
T  10457644 tttttcacacacaaaaactggagtccgaataaaggatgttccaaggcaattagaacattcattg-ctgaagttactcgcagaaagacttca 10457733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 10538546 - 10538703
Alignment:
Q  20 actaacccatcagtaaaagtatcacctgattaaataaagaacatgaaaaaacatactgtcacattaacatttgtttcacctagcagattttattggagac 119  Q
    |||||||| |||||||||| ||||||| ||||||||| || ||   ||||| | ||||||||||||||||||||| ||||||||  ||||| ||||||      
T  10538546 actaacccctcagtaaaagaatcacctaattaaataatgagcac--aaaaatagactgtcacattaacatttgttgcacctagcttattttgttggaggg 10538643  T
Q  120 gaatgtccataaatttgtatgagactggattgtgttttttaatgggatacagaactagag 179  Q
    ||||  ||||||||| |||||||| ||||||||||| | |||||||||| | ||||||||    
T  10538644 gaatacccataaattcgtatgagattggattgtgttgtgtaatgggatataaaactagag 10538703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 10467349 - 10467469
Alignment:
Q  23 aacccatcagtaaaagtatcacctgattaaataaagaacatgaaaaaacatactgtcacattaacatttgtttcacctagcagattttattggagacgaa 122  Q
    |||||||| ||||||||||||||| ||||||||| ||||| ||||||| |  |  || ||||||||||||||||||||| |  |||||||| |||| |||    
T  10467349 aacccatcggtaaaagtatcacctaattaaataatgaacacgaaaaaataggccatcgcattaacatttgtttcacctaacctattttatttgagaggaa 10467448  T
Q  123 tgtccataaatttgtatgaga 143  Q
    || ||||||||||||||||||    
T  10467449 tgcccataaatttgtatgaga 10467469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 193
Target Start/End: Original strand, 10482555 - 10482703
Alignment:
Q  45 ctgattaaataaagaacatgaaaaaacatactgtcacattaacatttgtttcacctagcagattttattggagacgaatgtccataaatttgtatgagac 144  Q
    |||||||||||| ||||||||||||||| | ||||||||||| ||||| ||||||||||| ||||| || |||| |||||  || || ||  || ||||     
T  10482555 ctgattaaataatgaacatgaaaaaacagattgtcacattaatatttggttcacctagcatattttgttcgagaggaatgctcaaaatttcctaagagat 10482654  T
Q  145 tggattgtgttttttaatgggatacagaactagagtgttgattttttca 193  Q
     ||||| |||| |||||| ||||| ||||||||||| ||| ||||||||    
T  10482655 aggattatgttgtttaataggatatagaactagagtattgcttttttca 10482703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 7466926 - 7466743
Alignment:
Q  23 aacccatcagtaaaagtatcacctgattaaataaagaacatgaaaaaacatactgtcacattaacatttgtttcacctagcagattttattggagacgaa 122  Q
    |||||||| |||| |||||||||||||||||||| ||| | || |||||| || ||||| | || ||| ||||||||||||| ||||| || || | |||    
T  7466926 aacccatcggtaatagtatcacctgattaaataatgaagacgataaaacagaccgtcacgtaaagattggtttcacctagcatattttgtttgataggaa 7466827  T
Q  123 tgtccataaatttgtatgagactggattgtgttttttaatgggatacagaactagagtgttgattttttcacacgcaaaaactgga 208  Q
    || | ||||||||||| |||| ||||||||||| ||| ||| |||| | ||||| | | ||| |||| |||||  |||||||||||    
T  7466826 tgacaataaatttgtaggagattggattgtgttgtttgatgtgatataaaactaaattattggttttgtcaca--caaaaactgga 7466743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 69 - 235
Target Start/End: Original strand, 10483075 - 10483237
Alignment:
Q  69 aacatactgtcacattaacatttgtttcacctagcagattttattggagacgaatgtccataaatttgtatgagactggattgtgttttttaatgggata 168  Q
    |||| ||||||||| ||||||||||||||||||||| ||||| |||||     ||| ||||||| | ||   ||||||||||||||| ||||||||||||    
T  10483075 aacagactgtcacactaacatttgtttcacctagcatattttgttgga-----atgcccataaactcgtc--agactggattgtgttgtttaatgggata 10483167  T
Q  169 c-----agaactagagtgttgattttttcacacgcaaaaactggaatcccaataaaagatgttacaaggcaa 235  Q
          ||||||| | | ||| ||||||||||| ||||  ||||||| |||||||| |||||||||||||||    
T  10483168 ttatatagaactaaactattggttttttcacacacaaa--ctggaattccaataaaggatgttacaaggcaa 10483237  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 10845341 - 10845425
Alignment:
Q  20 actaacccatcagtaaaagtatcacctgattaaataaagaacatg-aaaaaacatactgtcaca-ttaacatttgtttcacctag 102  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| | |||||| | | |||| || |||||||||||||| |||||    
T  10845341 actaacccatcagtaaaagtatctcctgattaaataatgaacacgtaaaaaaaaaattgtcgcatttaacatttgtttcgcctag 10845425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 167
Target Start/End: Complemental strand, 9079187 - 9079098
Alignment:
Q  78 tcacattaacatttgtttcacctagcagattttattggagacgaatgtccataaatttgtatgagactggattgtgttttttaatgggat 167  Q
    |||||||||||||| ||| | ||| || ||||| ||||||| ||||| ||| || || |||||||| |||||||| |  |||||||||||    
T  9079187 tcacattaacatttatttaagctatcatattttgttggagatgaatgcccacaatttcgtatgagattggattgtatagtttaatgggat 9079098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 24 - 275
Target Start/End: Complemental strand, 24051114 - 24050873
Alignment:
Q  24 acccatcagtaaaagtatcacctgattaaataaagaacatgaaaaaacatactgtcacattaacatttgtttcacctagcagattttattggagacgaat 123  Q
    ||||||||||||||||||| ||||||||||||| |||||  |||||| | ||||||||||||| | ||||||||||||||| ||||| ||||||| ||||    
T  24051114 acccatcagtaaaagtatcgcctgattaaataatgaacaaaaaaaaatagactgtcacattaagaattgtttcacctagcatattttgttggagaggaat 24051015  T
Q  124 gtccataaatttgtatgagactggattgtgttttttaatgggatacagaactagagtgttgattttttcacacgcaaaaactggaatcccaataaaagat 223  Q
    | |||         |||||| ||||||||||| ||||||| |||| ||||||||||| ||  |||||| |||| |||||||| || | |||||||  |||    
T  24051014 gccca---------atgagattggattgtgttgtttaatgagatatagaactagagtatttgttttttaacacacaaaaactagagtaccaataatggat 24050924  T
Q  224 gttacaaggcaatgtgaacattcattgtttgtagtgacttgcagaaagactt 275  Q
    ||| |||| |||| | |||||||||||  || ||| || |||||||||||||    
T  24050923 gttgcaagacaatataaacattcattg-ctgaagtaacatgcagaaagactt 24050873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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