View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1185_low_37 (Length: 320)
Name: NF1185_low_37
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_low_37 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 8 - 320
Target Start/End: Complemental strand, 42072340 - 42072016
Alignment:
| Q |
8 |
agattatactatatgcgcagtggaatgtttttgttgaggattgaaataagagaagaagaacaagatggaagaacaagtggtattcaacggttggatttga |
107 |
Q |
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| T |
42072340 |
agataataatatatgtgcagtggaatgtttttgttgaggattgaaataagagaagaagaacaagatggaagaacaagtggtattcaacggttagatttga |
42072241 |
T |
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| Q |
108 |
ttttgtgtgtatggttagattgtgatgtttgagaaacaagacatgaaatgaggaatggaaaagaaaacgtcacatcttaatcctaacgagctttgtctct |
207 |
Q |
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| T |
42072240 |
ttttgtgtgtatggttagattgtgatgtttgagaaacaagacatgaaatgaggaatggaaaagaaaacgtcacatcttaatcctaacgagctttgtctct |
42072141 |
T |
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| Q |
208 |
tttctaaatggaaaattcatggcttcagcacatgtgatgatg------------agtaattttaaaactatattaataattgtacttcatgatcttaatg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| ||||||||| |
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| T |
42072140 |
tttctaaatggaaaattcatggcttcagcacatgtgatgatgagtagagggatgagtaattttaattccatattaataattgtacttcatcatcttaatg |
42072041 |
T |
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| Q |
296 |
gcaaaatcactttaaacagatatat |
320 |
Q |
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| T |
42072040 |
gcaaaatcactttaaacatatatat |
42072016 |
T |
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