View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1185_low_38 (Length: 320)
Name: NF1185_low_38
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_low_38 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 28609236 - 28608917
Alignment:
| Q |
1 |
ttgagggatgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28609236 |
ttgagggatgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattgttgttcatcgttgtcaatctaaatccattaacat |
28609137 |
T |
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| Q |
101 |
actcatcatctaattccttttgtttctcactatccattaccatagataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttacc |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609136 |
actcatcatctaattccttttgcttctcactatccattacaatagataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttacc |
28609037 |
T |
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| Q |
201 |
aaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaag |
300 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28609036 |
aaacaggagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagataatgcttcgcgatcatcaggacctccaacaaag |
28608937 |
T |
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| Q |
301 |
atcatacaaatacgacaatt |
320 |
Q |
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||||||||||||||| |||| |
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| T |
28608936 |
atcatacaaatacgaaaatt |
28608917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 437668 - 437987
Alignment:
| Q |
1 |
ttgagggatgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacat |
100 |
Q |
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||||||| |||||||||||||||| | |||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||| |
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| T |
437668 |
ttgagggttgtgggaatatcttcacctgaatggacattaacttctgaataagatatagaatcattgttgttcatcgctgtcaatctaaatccattcacat |
437767 |
T |
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| Q |
101 |
actcatcatctaattccttttgtttctcactatccattaccatagataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttacc |
200 |
Q |
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||||||||||||| ||||| || ||||||||||||||||| ||||||| ||| || || || | ||||||||| |||||| |||||| |||| ||| | |
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| T |
437768 |
actcatcatctaactccttctgcttctcactatccattacaatagatagtatcccttgtggttcagcatgacttgaggtgtctactatttcagcattatc |
437867 |
T |
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| Q |
201 |
aaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaag |
300 |
Q |
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| T |
437868 |
aaacaggagcatccgaaccactgataattgggttcctatgcgtcctgccattctccatgcaacagctaaggcttcgcgatcatcaggaccaccaacaaag |
437967 |
T |
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| Q |
301 |
atcatacaaatacgacaatt |
320 |
Q |
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| T |
437968 |
atcatacaaatacgaaaatt |
437987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 311
Target Start/End: Complemental strand, 13660599 - 13660297
Alignment:
| Q |
9 |
tgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacatactcatca |
108 |
Q |
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|||||||||||||||| |||||||||||||| || ||||| ||||||||||||||| | |||| | | ||| ||||||| ||| ||||| || || |
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| T |
13660599 |
tgtgggaatatcttcacttgaatggacatcaacctccgaatatgatatagaatcattgttattcactgctttcagtctaaatgaatttacatattcttcg |
13660500 |
T |
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| Q |
109 |
tctaattccttttgtttctcactatccattaccatagataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaaga |
208 |
Q |
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|||| ||||| || |||||| |||||||||| | |||||||||||| | ||| || ||||||| | | | ||| || |||| ||||||||| |
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| T |
13660499 |
tctagatccttctgcttctcattatccattacaacagataatatgccttgtacttcataatgacttataatatttacttcggctgcttcgtcaaacaaga |
13660400 |
T |
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| Q |
209 |
gcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcataca |
308 |
Q |
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| T |
13660399 |
gcatccgaaccaatgataatcgggttcctgggtgccccaccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaagatcataca |
13660300 |
T |
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| Q |
309 |
aat |
311 |
Q |
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||| |
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| T |
13660299 |
aat |
13660297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 13653099 - 13652957
Alignment:
| Q |
9 |
tgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacatactcatca |
108 |
Q |
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|||||||||||||||| | |||||||||||||| |||||||| |||||| |||||||| | |||| | | ||| ||||||| ||| ||||| || || |
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| T |
13653099 |
tgtgggaatatcttcacctgaatggacatcaacctctgaataggatataaaatcattgttattcactgctttcagtctaaatgaatttacatattcttcg |
13653000 |
T |
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| Q |
109 |
tctaattccttttgtttctcactatccattaccatagataata |
151 |
Q |
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|||| ||||| || |||||| |||||||||| | |||||||| |
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| T |
13652999 |
tctagatccttctgcttctcattatccattacaacagataata |
13652957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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