View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1185_low_39 (Length: 319)

Name: NF1185_low_39
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1185_low_39
NF1185_low_39
[»] chr8 (6 HSPs)
chr8 (94-183)||(9674776-9674865)
chr8 (122-202)||(9686969-9687052)
chr8 (145-201)||(9688770-9688826)
chr8 (94-166)||(9691914-9691986)
chr8 (140-201)||(9684719-9684780)
chr8 (200-249)||(9684813-9684862)


Alignment Details
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 9674776 - 9674865
Alignment:
Q  94 agaaagagtgcatcatacatgaaagctccaattcaacaaattggacagactccatctgttttgttcctctcatcaatccaaactttcaac 183  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9674776 agaaagagtgcatcatacacaaaagctccaattcaacaaattggacagactccatctgttttgttcctctcatcaatccaaactttcaac 9674865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 9686969 - 9687052
Alignment:
Q  122 caattcaacaaattggacagactccatctgttttgt---tcctctcatcaatccaaactttcaactcaactttcctattctcac 202  Q
    |||||||||||| || ||||||||||||||| ||||   |||||||||||||||||||||||||| || |||||||||||||||    
T  9686969 caattcaacaaaatgaacagactccatctgtattgttgttcctctcatcaatccaaactttcaacacagctttcctattctcac 9687052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 9688770 - 9688826
Alignment:
Q  145 ccatctgttttgttcctctcatcaatccaaactttcaactcaactttcctattctca 201  Q
    |||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||    
T  9688770 ccatctgttttgttcctctcatcagtccaaactttcaacgcaactctccttttctca 9688826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 9691914 - 9691986
Alignment:
Q  94 agaaagagtgcatcatacatgaaagctccaattcaacaaattggacagactccatctgttttgttcctctcat 166  Q
    ||||||||  ||| |||||||||||||| | ||| ||||||||  |||||||||| |||||||||||||||||    
T  9691914 agaaagagcacattatacatgaaagctctagttcgacaaattgatcagactccatttgttttgttcctctcat 9691986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 9684719 - 9684780
Alignment:
Q  140 agactccatctgttttgttcctctcatcaatccaaactttcaactcaactttcctattctca 201  Q
    |||| |||||| |||||||||||||||||| ||| |||||||||  | ||||||||||||||    
T  9684719 agaccccatctattttgttcctctcatcaacccacactttcaacgtagctttcctattctca 9684780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 9684813 - 9684862
Alignment:
Q  200 cacagcttccccatacttagacttaataatctcaatcaactcgtgattca 249  Q
    |||||||||||||||||||||||| | ||| ||||||| ||| |||||||    
T  9684813 cacagcttccccatacttagacttcacaatttcaatcagctcatgattca 9684862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University