View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1185_low_42 (Length: 306)
Name: NF1185_low_42
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 30 - 279
Target Start/End: Complemental strand, 43094248 - 43094000
Alignment:
| Q |
30 |
catcctaccatttaagttcactaacacgttccctaatccaaacgacagccttctaattataatatttagcatacactcatgatcagaaatcttatttttg |
129 |
Q |
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| T |
43094248 |
catcctactatttaagttcactaacacgttccctaatccaaacgacagccttctaattataatatttagcatacactcatgatcagaaatcttatttttg |
43094149 |
T |
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| Q |
130 |
tgctaaaaagttatatatgcacgacaattaaacataannnnnnnnagggaacaattaaacatgtttcgatattaaaaagtttgtacctattggacctggt |
229 |
Q |
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| T |
43094148 |
tgctaaaaagttgtatatgcacgacaattaaacat-tttttttttagggaataattaaacatgtttcgatattaaaaactttgtacctattggacctggt |
43094050 |
T |
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| Q |
230 |
tttcagcttctttcaccgaacgaccctcatataatatcatctcctttgtt |
279 |
Q |
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| T |
43094049 |
tttcagcttctttcaccgaacgaccctcatataatatcatctcctttgtt |
43094000 |
T |
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