View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1185_low_43 (Length: 293)

Name: NF1185_low_43
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1185_low_43
NF1185_low_43
[»] chr5 (4 HSPs)
chr5 (71-222)||(6730603-6730754)
chr5 (71-216)||(6760265-6760410)
chr5 (71-179)||(6785481-6785589)
chr5 (71-179)||(6727644-6727752)


Alignment Details
Target: chr5 (Bit Score: 144; Significance: 9e-76; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 71 - 222
Target Start/End: Original strand, 6730603 - 6730754
Alignment:
Q  71 acaaccaccttattgatttttcaatccatgctcgaactgtctttgccattctcacagttgtttcttctttcaattcaagcctcaacaagtttggtggttc 170  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6730603 acaaccaccttattaatttttcaatccatgctcgaactgtctttgccattctcacagttgtttcttctttcaattcaagcctcaacaagtttggtggttc 6730702  T
Q  171 cctaaatttcaaacaataattaaatggaacttaactacctatttagagcaca 222  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6730703 cctaaatttcaaacaataaataaatggaacttaactacctatttagagcaca 6730754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 71 - 216
Target Start/End: Original strand, 6760265 - 6760410
Alignment:
Q  71 acaaccaccttattgatttttcaatccatgctcgaactgtctttgccattctcacagttgtttcttctttcaattcaagcctcaacaagtttggtggttc 170  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6760265 acaaccaccttattgatttctcagtccatgctcgaactgtctttgccattctcacagttgtttcttttttcaattcaagcctcaacaagtttggtggttc 6760364  T
Q  171 cctaaatttcaaacaataattaaatggaacttaactacctatttag 216  Q
    ||||||||||| ||||| | ||||||||||||||||||||||||||    
T  6760365 cctaaatttcacacaatcaataaatggaacttaactacctatttag 6760410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 6785481 - 6785589
Alignment:
Q  71 acaaccaccttattgatttttcaatccatgctcgaactgtctttgccattctcacagttgtttcttctttcaattcaagcctcaacaagtttggtggttc 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||| ||||||||||||||||| |||||    
T  6785481 acaaccaccttattgatttttcaatccatgctcgaactgtctttgccattctcgtagctgtttcttctttcaattccagcctcaacaagtttggcggttc 6785580  T
Q  171 cctaaattt 179  Q
    |||||||||    
T  6785581 cctaaattt 6785589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 6727644 - 6727752
Alignment:
Q  71 acaaccaccttattgatttttcaatccatgctcgaactgtctttgccattctcacagttgtttcttctttcaattcaagcctcaacaagtttggtggttc 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||| ||||| ||||||||||| |||||    
T  6727644 acaaccaccttattgatttttcaatccatgctcgaactgtctttgccattctcgtagctgtttcttctttcaattccagccttaacaagtttggcggttc 6727743  T
Q  171 cctaaattt 179  Q
    |||||||||    
T  6727744 cctaaattt 6727752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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