View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1185_low_44 (Length: 292)

Name: NF1185_low_44
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1185_low_44
NF1185_low_44
[»] chr7 (4 HSPs)
chr7 (51-218)||(18317940-18318107)
chr7 (54-193)||(25874043-25874182)
chr7 (123-178)||(21072117-21072172)
chr7 (117-159)||(21015376-21015418)
[»] chr1 (4 HSPs)
chr1 (60-169)||(25032293-25032402)
chr1 (77-178)||(9555310-9555412)
chr1 (112-175)||(43149567-43149630)
chr1 (126-178)||(45808623-45808675)
[»] chr6 (1 HSPs)
chr6 (77-160)||(34373363-34373447)
[»] chr2 (2 HSPs)
chr2 (117-184)||(16862472-16862539)
chr2 (117-158)||(26318522-26318563)
[»] chr5 (2 HSPs)
chr5 (77-178)||(15830977-15831079)
chr5 (123-157)||(10828220-10828254)
[»] chr3 (1 HSPs)
chr3 (117-178)||(32004008-32004069)
[»] chr8 (2 HSPs)
chr8 (123-178)||(28472413-28472468)
chr8 (77-178)||(14489346-14489448)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 8e-64; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 51 - 218
Target Start/End: Original strand, 18317940 - 18318107
Alignment:
Q  51 atatgaaaggagcgtaataatagagtttttcaaaggaaagaggacatattgcttatgctatgcgacagggcgaaacttcaatctttttggtggttgaagt 150  Q
    |||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||| |  ||||||||||||||||||    
T  18317940 atatgaatagagcgtaataatagagtttttcaaaggaaagaggacatgttgcttatgctatacgaaagggcgaaacttaagcctttttggtggttgaagt 18318039  T
Q  151 cgaaatacacgacattcgattttgactacaaattctggtggcgcaatcctctagcttgtttaattact 218  Q
    |||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  18318040 cgaaatacgcgacattcgattttgactaccaattctggtggcggaatcctctagcttgtttaattact 18318107  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 25874043 - 25874182
Alignment:
Q  54 tgaaaggagcgtaataatagagtttttcaaaggaaagaggacatattgcttatgctatgcgacagggcgaaacttcaatctttttggtggttgaagtcga 153  Q
    ||||| ||||||||||||||| ||||  |||||||||||||||  ||||  | | |||| || |||| ||| ||| ||||||||| | ||||||||||||    
T  25874043 tgaaaagagcgtaataatagaattttctaaaggaaagaggacaggttgcaaacgttatgtgaaagggtgaagctttaatcttttttgcggttgaagtcga 25874142  T
Q  154 aatacacgacattcgattttgactacaaattctggtggcg 193  Q
    | ||||| |||||||||||||||||| |||| ||| ||||    
T  25874143 agtacactacattcgattttgactaccaattgtggcggcg 25874182  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 21072117 - 21072172
Alignment:
Q  123 aaacttcaatctttttggtggttgaagtcgaaatacacgacattcgattttgacta 178  Q
    |||||||||||||||||||||||||| ||||||||||| |  || |||||||||||    
T  21072117 aaacttcaatctttttggtggttgaaatcgaaatacactaattttgattttgacta 21072172  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 21015418 - 21015376
Alignment:
Q  117 agggcgaaacttcaatctttttggtggttgaagtcgaaataca 159  Q
    ||||| || ||||||||||||||||||||||| ||||||||||    
T  21015418 agggcaaagcttcaatctttttggtggttgaaatcgaaataca 21015376  T

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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 25032293 - 25032402
Alignment:
Q  60 gagcgtaataatagagtttttcaaaggaaagaggacatattgcttatgctatgcgacagggcgaaacttcaatctttttggtggttgaagtcgaaataca 159  Q
    ||||||||||||| |||||||||||||||||||||||  |||| |||| |||| || || | ||| ||||||||||||| |||||||| ||||||||||     
T  25032293 gagcgtaataataaagtttttcaaaggaaagaggacaagttgcatatgatatgtgaaagtgtgaagcttcaatcttttttgtggttgatgtcgaaatacg 25032392  T
Q  160 cgacattcga 169  Q
    | ||||||||    
T  25032393 ctacattcga 25032402  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 178
Target Start/End: Complemental strand, 9555412 - 9555310
Alignment:
Q  77 ttttcaaaggaaag-aggacatattgcttatgctatgcgacagggcgaaacttcaatctttttggtggttgaagtcgaaatacacgacattcgattttga 175  Q
    |||||||||||||| |||| |  ||||| | |||| | || ||||| || ||||||||||||||||||||||| ||||||||||| |  || ||||||||    
T  9555412 ttttcaaaggaaaggaggataacttgctaacgctaggtgaaagggcaaagcttcaatctttttggtggttgaaatcgaaatacactaattttgattttga 9555313  T
Q  176 cta 178  Q
    |||    
T  9555312 cta 9555310  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 43149630 - 43149567
Alignment:
Q  112 gcgacagggcgaaacttcaatctttttggtggttgaagtcgaaatacacgacattcgattttga 175  Q
    |||| |||| ||| ||||| || |||||||||||||| ||||||||||| || |||||||||||    
T  43149630 gcgaaagggtgaagcttcagtccttttggtggttgaaatcgaaatacactactttcgattttga 43149567  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 45808623 - 45808675
Alignment:
Q  126 cttcaatctttttggtggttgaagtcgaaatacacgacattcgattttgacta 178  Q
    ||||||||||||| ||||||||| ||||||||||| |  || |||||||||||    
T  45808623 cttcaatcttttttgtggttgaaatcgaaatacactaattttgattttgacta 45808675  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 160
Target Start/End: Original strand, 34373363 - 34373447
Alignment:
Q  77 ttttcaaaggaaag-aggacatattgcttatgctatgcgacagggcgaaacttcaatctttttggtggttgaagtcgaaatacac 160  Q
    |||||||||||||| |||| |  ||||| | |||| | || ||||| |||||||||||||||||||||||||| |||||||||||    
T  34373363 ttttcaaaggaaaggaggataacttgctaacgctaggtgaaagggcaaaacttcaatctttttggtggttgaaatcgaaatacac 34373447  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 16862472 - 16862539
Alignment:
Q  117 agggcgaaacttcaatctttttggtggttgaagtcgaaatacacgacattcgattttgactacaaatt 184  Q
    |||| ||| ||||| |||||||||||||||||||| |||||| | || ||||||||||||||| ||||    
T  16862472 agggtgaagcttcagtctttttggtggttgaagtcaaaatacgctactttcgattttgactaccaatt 16862539  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 26318522 - 26318563
Alignment:
Q  117 agggcgaaacttcaatctttttggtggttgaagtcgaaatac 158  Q
    ||||| || ||||||||||||||||||||||| |||||||||    
T  26318522 agggcaaagcttcaatctttttggtggttgaaatcgaaatac 26318563  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 15830977 - 15831079
Alignment:
Q  77 ttttcaaaggaaag-aggacatattgcttatgctatgcgacagggcgaaacttcaatctttttggtggttgaagtcgaaatacacgacattcgattttga 175  Q
    |||||||||||||| |||| |  ||||| | |||| | || ||||| || ||||||||||||||||||||||| ||||||||||| |  || ||||||||    
T  15830977 ttttcaaaggaaaggaggataacttgctaaagctaggtgaaagggcaaagcttcaatctttttggtggttgaaatcgaaatacactaactttgattttga 15831076  T
Q  176 cta 178  Q
    |||    
T  15831077 cta 15831079  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 10828254 - 10828220
Alignment:
Q  123 aaacttcaatctttttggtggttgaagtcgaaata 157  Q
    |||||||||||||||||||||||||||| ||||||    
T  10828254 aaacttcaatctttttggtggttgaagttgaaata 10828220  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 32004008 - 32004069
Alignment:
Q  117 agggcgaaacttcaatctttttggtggttgaagtcgaaatacacgacattcgattttgacta 178  Q
    ||||| || ||||||||||||||||||||||| ||||||||||| |  || |||||||||||    
T  32004008 agggcaaagcttcaatctttttggtggttgaaatcgaaatacactaattttgattttgacta 32004069  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 28472413 - 28472468
Alignment:
Q  123 aaacttcaatctttttggtggttgaagtcgaaatacacgacattcgattttgacta 178  Q
    |||||| | ||||||||||||||||| |||||||| || ||||||| |||||||||    
T  28472413 aaactttagtctttttggtggttgaaatcgaaatatacaacattcgtttttgacta 28472468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 178
Target Start/End: Complemental strand, 14489448 - 14489346
Alignment:
Q  77 ttttcaaaggaaag-aggacatattgcttatgctatgcgacagggcgaaacttcaatctttttggtggttgaagtcgaaatacacgacattcgattttga 175  Q
    |||||||||||||| |||| |  ||||| | |||| | || ||||| || ||||||| ||||||||||||||| ||||||||||| |  || ||||||||    
T  14489448 ttttcaaaggaaaggaggataacttgctaacgctaggtgaaagggcaaagcttcaatttttttggtggttgaaatcgaaatacactaattttgattttga 14489349  T
Q  176 cta 178  Q
    |||    
T  14489348 cta 14489346  T

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