View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1185_low_50 (Length: 263)

Name: NF1185_low_50
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1185_low_50
NF1185_low_50
[»] chr8 (13 HSPs)
chr8 (75-260)||(44547311-44547496)
chr8 (133-260)||(44547447-44547574)
chr8 (133-226)||(44547525-44547618)
chr8 (169-260)||(44547645-44547736)
chr8 (169-256)||(44547849-44547936)
chr8 (133-231)||(44547969-44548067)
chr8 (133-260)||(44547891-44548018)
chr8 (169-260)||(44548089-44548180)
chr8 (133-231)||(44547687-44547785)
chr8 (133-226)||(44548167-44548260)
chr8 (169-249)||(44547807-44547887)
chr8 (169-249)||(44548047-44548127)
chr8 (169-251)||(44547603-44547685)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 75 - 260
Target Start/End: Original strand, 44547311 - 44547496
Alignment:
Q  75 ataatactgtaacagatttcggtgaagctacaatgcaagtggaggttggtcctcaggttcaagagctagaaagggtggtagctggtcctcaagatcaaga 174  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44547311 ataatactataacagatttcggtgaagctacaatgcaagtggagattggtcctcaggttcaagagctagaaagggtggtagctggtcctcaagatcaaga 44547410  T
Q  175 gctaggaagggtgggggctggtcctcaggctcaacatcaagagctaggaaggatggtgcccggtcctcaggctcaacagctaggaa 260  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||| |||| ||||  | |||||||| | |||| |||||||||    
T  44547411 gctaggaagggtggtggctggtcctcaggctcaacctcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaa 44547496  T

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Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 133 - 260
Target Start/End: Original strand, 44547447 - 44547574
Alignment:
Q  133 tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtgggggctggtcctcaggctcaacatcaagagctaggaaggatggtg 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  || |||||||||||||| |||||||||||||||| ||||     
T  44547447 tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtggtgattgctcctcaggctcaacctcaagagctaggaagggtggta 44547546  T
Q  233 cccggtcctcaggctcaacagctaggaa 260  Q
     | |||||||| |||||| |||||||||    
T  44547547 gctggtcctcatgctcaagagctaggaa 44547574  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 44547525 - 44547618
Alignment:
Q  133 tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtgggggctggtcctcaggctcaacatcaagagctaggaagg 226  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||||||||| |||  |||| ||| |||| ||||| |||| |||||||||||    
T  44547525 tcaagagctaggaagggtggtagctggtcctcatgctcaagagctaggaaggatggttgctgctccacaggatcaacctcaaaagctaggaagg 44547618  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 44547645 - 44547736
Alignment:
Q  169 tcaagagctaggaagggtgggggctggtcctcaggctcaacatcaagagctaggaaggatggtgcccggtcctcaggctcaacagctaggaa 260  Q
    |||| ||||||||||||||| ||| |||||||| ||||||| |||||||||||||| | ||||| | ||||||||| ||||| |||||||||    
T  44547645 tcaaaagctaggaagggtggtggcgggtcctcaagctcaacctcaagagctaggaatggtggtggctggtcctcagactcaagagctaggaa 44547736  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 44547849 - 44547936
Alignment:
Q  169 tcaagagctaggaagggtgggggctggtcctcaggctcaacatcaagagctaggaaggatggtgcccggtcctcaggctcaacagcta 256  Q
    |||||||||||||||||||| |||||||||||| ||||| | |||||||||||||| | ||||| | ||| ||||| ||||| |||||    
T  44547849 tcaagagctaggaagggtggtggctggtcctcaagctcagcctcaagagctaggaatggtggtggctggttctcagactcaaaagcta 44547936  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 231
Target Start/End: Original strand, 44547969 - 44548067
Alignment:
Q  133 tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtgggggctggtcctcaggctcaacatcaagagctaggaaggatggt 231  Q
    |||| |||||| ||||||||| ||||||||||| | ||||||| |||||||||||| ||||  ||| || ||||||| ||||||||| |||||| ||||    
T  44547969 tcaaaagctaggaagggtggtggctggtcctcaggctcaagagataggaagggtggtggcttctccacatgctcaacctcaagagctgggaagggtggt 44548067  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 260
Target Start/End: Original strand, 44547891 - 44548018
Alignment:
Q  133 tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtgggggctggtcctcaggctcaacatcaagagctaggaaggatggtg 232  Q
    ||||||||||| || |||||| |||||| ||||   |||| ||||| |||||||||  |||| ||| ||| | |||| |||| ||||||||||| |||||    
T  44547891 tcaagagctaggaatggtggtggctggttctcagactcaaaagctaagaagggtggttgctgctccacagacccaacctcaaaagctaggaagggtggtg 44547990  T
Q  233 cccggtcctcaggctcaacagctaggaa 260  Q
     | ||||||||||||||| || ||||||    
T  44547991 gctggtcctcaggctcaagagataggaa 44548018  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 44548089 - 44548180
Alignment:
Q  169 tcaagagctaggaagggtgggggctggtcctcaggctcaacatcaagagctaggaaggatggtgcccggtcctcaggctcaacagctaggaa 260  Q
    |||| ||||||||||||||| |||||||||||| ||||| | ||||||| |||||| | ||||| | ||| ||||| ||||| |||||||||    
T  44548089 tcaaaagctaggaagggtggtggctggtcctcaagctcagcctcaagagttaggaatggtggtgactggttctcagactcaaaagctaggaa 44548180  T

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Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 231
Target Start/End: Original strand, 44547687 - 44547785
Alignment:
Q  133 tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtgggggctggtcctcaggctcaacatcaagagctaggaaggatggt 231  Q
    ||||||||||| || |||||| |||||||||||   ||||||||||||||||||||  | || ||| ||| |||||| |||| ||||||||||| ||||    
T  44547687 tcaagagctaggaatggtggtggctggtcctcagactcaagagctaggaagggtggttgttgctccacagactcaacctcaaaagctaggaagggtggt 44547785  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 44548167 - 44548260
Alignment:
Q  133 tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtgggggctggtcctcaggctcaacatcaagagctaggaagg 226  Q
    |||| |||||| |||||| || ||||||||||| | |||||||||||||||| ||| ||||| ||| ||  |||| | ||||||||| ||||||    
T  44548167 tcaaaagctaggaagggtagtggctggtcctcaggctcaagagctaggaaggatggtggctgctccacaaactcagcctcaagagcttggaagg 44548260  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 44547807 - 44547887
Alignment:
Q  169 tcaagagctaggaagggtgggggctggtcctcaggctcaacatcaagagctaggaaggatggtgcccggtcctcaggctca 249  Q
    ||||||||||| ||| |||| || || ||| || ||||||| |||||||||||||||| ||||| | |||||||| |||||    
T  44547807 tcaagagctagaaagagtggtggttgctccacatgctcaacctcaagagctaggaagggtggtggctggtcctcaagctca 44547887  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 44548047 - 44548127
Alignment:
Q  169 tcaagagctaggaagggtgggggctggtcctcaggctcaacatcaagagctaggaaggatggtgcccggtcctcaggctca 249  Q
    ||||||||| ||||||||||  |||  ||| |||||||||| |||| ||||||||||| ||||| | |||||||| |||||    
T  44548047 tcaagagctgggaagggtggttgctactccacaggctcaacctcaaaagctaggaagggtggtggctggtcctcaagctca 44548127  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 44547603 - 44547685
Alignment:
Q  169 tcaagagctaggaagggtgggggctggtcctcaggctcaacatcaagagctaggaaggatggtgcccggtcctcaggctcaac 251  Q
    |||| ||||||||||||||  ||||| ||| || ||||| | |||| ||||||||||| ||||| | |||||||| |||||||    
T  44547603 tcaaaagctaggaagggtgatggctgctccacatgctcagcctcaaaagctaggaagggtggtggcgggtcctcaagctcaac 44547685  T

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