View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1185_low_51 (Length: 257)
Name: NF1185_low_51
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_low_51 |
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Alignment Details
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 5032416 - 5032633
Alignment:
| Q |
1 |
cttttatattcaagaaactaaaaaatattagttaattttagggnnnnnnnnnnnnnnnncttctccatgtttctatcaaatggatttgtactttgttaat |
100 |
Q |
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| T |
5032416 |
cttttatattcaagaaactaaaaaatattagttaattttagggttttttatttttt----ttcttcatgtttctatcaaatggatttgtactttgttaat |
5032511 |
T |
|
| Q |
101 |
atttgctagagcaagattggtgattggttgttcacatatcattaaaaaagtttgacttttatcatatctagtttnnnnnnnnnnnnnnnnnntaataatg |
200 |
Q |
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|| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
5032512 |
atatgctagagca-------tgattggttgttcacatatcattaaaaaagttttacttttatcatatctagtttaaaagtaaaaaataaaaataataatg |
5032604 |
T |
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| Q |
201 |
aattgatattgattaaagatgtaattttt |
229 |
Q |
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|
||||||||||||||||||||||||||||| |
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| T |
5032605 |
aattgatattgattaaagatgtaattttt |
5032633 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 10513216 - 10513184
Alignment:
| Q |
138 |
atcattaaaaaagtttgacttttatcatatcta |
170 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
10513216 |
atcattaaaaaagtttgactttcatcatatcta |
10513184 |
T |
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