View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1185_low_52 (Length: 254)
Name: NF1185_low_52
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 32 - 243
Target Start/End: Original strand, 44548143 - 44548357
Alignment:
| Q |
32 |
gttatcgtgcctgccgtaagtttttattgttaatatggatcgctacaatattggttgtgtggacagaa----agaaataacatgctatctaaattcaaag |
127 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44548143 |
gttatcgtgcctgccgtaagtttttattattaatatggatcgc-acaattttggttgtgtggacagaaagaaagaaataacatgctatctaaattcaaag |
44548241 |
T |
|
| Q |
128 |
aaatgtcaattatgcaaccattagataaagtgaaattgctctcttttttgtggctgaaggctaagtatgttaactttcctttttgttatcatatgtggta |
227 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||| |
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| T |
44548242 |
aaatgtcaattatgcaaccgttagataaagtgaaattgctctcttttttgtggctgaaggctaagtatgctaacttccttttttgttatcatatgtggta |
44548341 |
T |
|
| Q |
228 |
gcgaagtcctttgttt |
243 |
Q |
| |
|
|||||||||||||||| |
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| T |
44548342 |
gcgaagtcctttgttt |
44548357 |
T |
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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 91 - 226
Target Start/End: Original strand, 17508445 - 17508579
Alignment:
| Q |
91 |
tggacagaaagaaataacatgctatctaaattcaaagaaatgtcaattatgcaaccattagataaagtgaaattgctctcttttttgtggctgaaggcta |
190 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||||| ||||| ||| |||| |
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| T |
17508445 |
tggacagaaagaaataacatgctatttaaattcaaagaaaagtctattatgcaactgttagataaagttaaattgctctctttttggtggccgaa-gcta |
17508543 |
T |
|
| Q |
191 |
agtatgttaactttcctttttgttatcatatgtggt |
226 |
Q |
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| |||| |||||||| |||| | ||||||||||||| |
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| T |
17508544 |
aatatgctaactttctttttagctatcatatgtggt |
17508579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 93 - 222
Target Start/End: Original strand, 20985402 - 20985531
Alignment:
| Q |
93 |
gacagaaagaaataacatgctatctaaattcaaagaaatgtcaattatgcaaccattagataaagtgaaattgctctcttttttgtggctgaaggctaag |
192 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||| ||||||||| |||||||||| ||||||||||||||| ||||| ||| ||||||| |
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| T |
20985402 |
gacagaaagaaataacatgctatttaaattcaaagaaaagtctattatgcaattgctagataaagtaaaattgctctcttttatgtggttgacggctaag |
20985501 |
T |
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| Q |
193 |
tatgttaactttcctttttgttatcatatg |
222 |
Q |
| |
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||| ||| |||||||| | ||||||||| |
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| T |
20985502 |
aatgctaaagttccttttggctatcatatg |
20985531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 32287618 - 32287498
Alignment:
| Q |
89 |
tgtggacagaaagaaataacatgctatctaaattcaaagaaatgtcaattatgcaaccattagataaagtgaaattgctctcttttttgtggctgaaggc |
188 |
Q |
| |
|
||||||||||||||||||| | ||||| |||||| |||||||||| ||||||||| ||||||||||| ||||| | ||||||| || ||||||||| |
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| T |
32287618 |
tgtggacagaaagaaataataggctatttaaattaaaagaaatgttaattatgcagttgttagataaagtacaattgatttctttttggtagctgaaggc |
32287519 |
T |
|
| Q |
189 |
taagtatgttaactttccttt |
209 |
Q |
| |
|
||||| | |||||||||||| |
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| T |
32287518 |
aaagtaggctaactttccttt |
32287498 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 226
Target Start/End: Original strand, 19637003 - 19637142
Alignment:
| Q |
90 |
gtggacagaaagaaataacatgctatctaaattcaaagaaatgtcaattatgcaaccattagataaagtgaaattg---ctctcttttttgtggctgaag |
186 |
Q |
| |
|
|||||||||||||||||| | ||| | |||||| ||||||| ||||||||| ||| ||||||||||| ||||| | | ||||||||| ||||| |
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| T |
19637003 |
gtggacagaaagaaataataggctgtttaaattaaaagaaaggtcaattatacaattgttagataaagtacaattgaatttattttttttgtgagtgaag |
19637102 |
T |
|
| Q |
187 |
gctaagtatgttaactttcctttttgttatcatatgtggt |
226 |
Q |
| |
|
| ||||||| |||||||| |||| | |||||| |||||| |
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| T |
19637103 |
gtaaagtatgataactttctttttggatatcatttgtggt |
19637142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 33013888 - 33013787
Alignment:
| Q |
132 |
gtcaattatgcaaccattagataaagtgaaattgctctcttttttgtggctgaaggctaagtatgttaactttcctttttgttatcatatgtggtagcga |
231 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||| || | ||||||| ||||||||| ||||||||| ||| ||||||||| | ||||||||||||| |||| |
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| T |
33013888 |
gtcaatcatgcaactattagataaagtaaaaatgatatctttttgatggctgaagactaagtatgctaattttccttttggctatcatatgtggtggcga |
33013789 |
T |
|
| Q |
232 |
ag |
233 |
Q |
| |
|
|| |
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|
| T |
33013788 |
ag |
33013787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 192
Target Start/End: Original strand, 26991561 - 26991669
Alignment:
| Q |
84 |
ggttgtgtggacagaaagaaataacatgctatctaaattcaaagaaatgtcaattatgcaaccattagataaagtgaaattgctctcttttttgtggctg |
183 |
Q |
| |
|
|||| |||||| |||||||||||| | ||| | |||||| ||||||| |||| |||||||||| | ||||||||| ||| || | ||||||| |||| || |
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| T |
26991561 |
ggttttgtggagagaaagaaataataagctttttaaatttaaagaaaggtcatttatgcaaccgtcagataaagtaaaaatgatatctttttggtggttg |
26991660 |
T |
|
| Q |
184 |
aaggctaag |
192 |
Q |
| |
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||| ||||| |
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| T |
26991661 |
aagactaag |
26991669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 7552404 - 7552285
Alignment:
| Q |
89 |
tgtggacagaaagaaataacatgctatctaaattcaaagaaatgtcaattatgcaaccattagataaagtgaaattgctctcttttttgtggctgaaggc |
188 |
Q |
| |
|
||||||||||||||| ||| | | | | | |||| ||||||| ||||||||||||| ||||||||||| ||||| | ||||||| ||||| ||||| |
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|
| T |
7552404 |
tgtggacagaaagaagtaataggttgtttgaattaaaagaaaggtcaattatgcaattgttagataaagttcaattgatttctttttggtggccgaaggt |
7552305 |
T |
|
| Q |
189 |
taagtatgttaactttcctt |
208 |
Q |
| |
|
|| |||||||||||||||| |
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|
| T |
7552304 |
gaaatatgttaactttcctt |
7552285 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 12828404 - 12828308
Alignment:
| Q |
91 |
tggacagaaagaaataacatgctatctaaattcaaagaaatgtcaattatgcaaccattagataaagtgaaattgctctcttttttgtggctgaaggc |
188 |
Q |
| |
|
|||||| |||||||||||| ||| | |||||| ||||||| ||||||||||||| ||||||||||| ||||| | | ||||| |||||||||||| |
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|
| T |
12828404 |
tggacaaaaagaaataacaagctctttaaattaaaagaaaggtcaattatgcaattgttagataaagtacaattgat-tttttttggtggctgaaggc |
12828308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 3147893 - 3147819
Alignment:
| Q |
148 |
ttagataaagtgaaattgctctcttttttgtggctgaaggctaagtatgttaactttcctttttgttatcatatg |
222 |
Q |
| |
|
||||||||||| |||||| ||||||| | ||||| ||||| ||||||||||||||| ||||| | ||||||||| |
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|
| T |
3147893 |
ttagataaagtaaaattgatctctttctggtggcctaaggcaaagtatgttaacttttcttttggctatcatatg |
3147819 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 224
Target Start/End: Original strand, 47163555 - 47163689
Alignment:
| Q |
89 |
tgtggacagaaagaaataacatgctatctaaattcaaagaaatgtcaattatgcaaccattagataaagtgaaattgctctcttttttgtggctgaaggc |
188 |
Q |
| |
|
|||||||| |||||||||| | | | | |||||| ||||||| || ||||||| || ||||||||||| ||||| | ||||||| ||||| |||||| |
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|
| T |
47163555 |
tgtggacaaaaagaaataataggttgtttaaattaaaagaaaggttaattatgtaattgttagataaagttcaattgatatctttttggtggc-gaaggc |
47163653 |
T |
|
| Q |
189 |
taagtatgttaactttcctttttgttatcatatgtg |
224 |
Q |
| |
|
||||||| ||| ||| ||||| | ||||||||||| |
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|
| T |
47163654 |
aaagtatgctaaattttcttttggctatcatatgtg |
47163689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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