View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1185_low_53 (Length: 252)
Name: NF1185_low_53
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 31995262 - 31995502
Alignment:
| Q |
1 |
tgaaatacactactccaaaacagcagtatctaactacatggatgctgctattgtcacaacgcttcaaatccatgccactcaacctcctggagatatattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31995262 |
tgaaatacactactccaaaacagcagtatctaactacatggatgctgctattgtcacaacgcttcaaatccatgccactcaacctcctggagatatattg |
31995361 |
T |
|
| Q |
101 |
gtattccttgctggtcaagaagaaattgaaagcgtagaagaaaacctgaagtatcagatgagaggtttggggactaaattagacgagttaattatatgcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31995362 |
gtattccttgctggtcaagaagaaattgaaagcgtagaagaaaacctgaagtatcagatgagaggtttggggactaaattagatgagttaattatatgcc |
31995461 |
T |
|
| Q |
201 |
ctatatatgccaacctgccaactgaactgcaagctagaata |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
31995462 |
ctatatatgccaacctgccaactgaactgcaagctagaata |
31995502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 15841712 - 15841952
Alignment:
| Q |
1 |
tgaaatacactactccaaaacagcagtatctaactacatggatgctgctattgtcacaacgcttcaaatccatgccactcaacctcctggagatatattg |
100 |
Q |
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||||||||||| | | ||| || ||| | || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||| |
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| T |
15841712 |
tgaaatacacttcacaaaagcaccagaagctgactacttggatgctgctattgtcacaacgcttcaaatccatgccactcaatctcccagagaaatattg |
15841811 |
T |
|
| Q |
101 |
gtattccttgctggtcaagaagaaattgaaagcgtagaagaaaacctgaagtatcagatgagaggtttggggactaaattagacgagttaattatatgcc |
200 |
Q |
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| T |
15841812 |
gtattccttagtggtcaagaagaaattgaaaccgtagaagaaatcctgaagcatcggatgagacgtttaggaactaaaatagctgaattaattatatgtc |
15841911 |
T |
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| Q |
201 |
ctatatatgccaacctgccaactgaactgcaagctagaata |
241 |
Q |
| |
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|||||||||||||||| |||||||||| ||||||| |||| |
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| T |
15841912 |
ctatatatgccaacctaccaactgaaccacaagctaaaata |
15841952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 32 - 241
Target Start/End: Original strand, 24009745 - 24009954
Alignment:
| Q |
32 |
aactacatggatgctgctattgtcacaacgcttcaaatccatgccactcaacctcctggagatatattggtattccttgctggtcaagaagaaattgaaa |
131 |
Q |
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|||||| | |||||||||||||| || |||||||| |||||| ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
24009745 |
aactactttgatgctgctattgttacgacgcttcagatccataccactcaacctcccggagatatattgctattccttactggtcaagaagaaattgaaa |
24009844 |
T |
|
| Q |
132 |
gcgtagaagaaaacctgaagtatcagatgagaggtttggggactaaattagacgagttaattatatgccctatatatgccaacctgccaactgaactgca |
231 |
Q |
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|| ||||||| | |||||| || | || ||| |||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||| | || |
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| T |
24009845 |
ccgcagaagaacatctgaagcttcgggtgggagccttggggactaaaatagctgagttaattatatgtcctatatatgccaacctaccaactgaaataca |
24009944 |
T |
|
| Q |
232 |
agctagaata |
241 |
Q |
| |
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||||| |||| |
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| T |
24009945 |
agctaaaata |
24009954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 7287507 - 7287747
Alignment:
| Q |
1 |
tgaaatacactactccaaaacagcagtatctaactacatggatgctgctattgtcacaacgcttcaaatccatgccactcaacctcctggagatatattg |
100 |
Q |
| |
|
||||||||||| ||||| || ||| | || ||||| | ||||| |||||||| ||| | ||||||||||||| ||||||||||||||||||||||| |
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| T |
7287507 |
tgaaatacactttaccaaagcaccagaagctgactacttagatgcagctattgtaacagcacttcaaatccatgttactcaacctcctggagatatatta |
7287606 |
T |
|
| Q |
101 |
gtattccttgctggtcaagaagaaattgaaagcgtagaagaaaacctgaagtatcagatgagaggtttggggactaaattagacgagttaattatatgcc |
200 |
Q |
| |
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|||||||| |||||||||||||||| |||| | ||||||| | ||||| ||| | ||||| || ||||||||| | | || ||||||||||| | |
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| T |
7287607 |
atattccttactggtcaagaagaaatcgaaacggctgaagaaatcttgaagcatcgaactagaggcttagggactaaaattgctgaattaattatatgtc |
7287706 |
T |
|
| Q |
201 |
ctatatatgccaacctgccaactgaactgcaagctagaata |
241 |
Q |
| |
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|||||||||||||||| ||||||||||| || |||| |||| |
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| T |
7287707 |
ctatatatgccaacctaccaactgaactacaggctaaaata |
7287747 |
T |
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