View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1185_low_54 (Length: 252)
Name: NF1185_low_54
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 2 - 242
Target Start/End: Original strand, 46185399 - 46185641
Alignment:
| Q |
2 |
ttttattttattttataatactgtctagcatattcggtttgttattatatcctagttgtcttcgctataattagttatgttaattaaaattgcaaggaaa |
101 |
Q |
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| T |
46185399 |
ttttttttttttttataatattgtctagcatattcggtttgttattctatcctagttgtcttcgttataattagttatgttaattaaaattgcaaggaaa |
46185498 |
T |
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| Q |
102 |
tgagaaattaaaagaaaaactctagtagag--tttgtaatatgattttactgtgctattaattaatagagcaattcaaatgttaataccaaaattgggat |
199 |
Q |
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| T |
46185499 |
tgagaaattaaaagaaaaactctagtagagagtttgtaatatgattttactgtgctattaattaatagagcaattcaaatgttaataccaaaattgggat |
46185598 |
T |
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| Q |
200 |
ctttcctcatttttggtgagtcataatcatccaaatccctatg |
242 |
Q |
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| T |
46185599 |
ctttcctcatttttggtgagtcataatcatctaaatccctatg |
46185641 |
T |
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