View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1185_low_57 (Length: 245)

Name: NF1185_low_57
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1185_low_57
NF1185_low_57
[»] chr3 (3 HSPs)
chr3 (3-172)||(30765789-30765958)
chr3 (3-85)||(23216890-23216972)
chr3 (126-166)||(23216774-23216814)
[»] chr7 (3 HSPs)
chr7 (3-85)||(33865728-33865810)
chr7 (3-85)||(5790396-5790478)
chr7 (126-166)||(33865880-33865920)
[»] scaffold0524 (1 HSPs)
scaffold0524 (5-85)||(5285-5365)
[»] chr4 (1 HSPs)
chr4 (3-82)||(7134960-7135039)
[»] chr6 (2 HSPs)
chr6 (3-73)||(11075011-11075081)
chr6 (126-166)||(11075167-11075207)


Alignment Details
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 172
Target Start/End: Complemental strand, 30765958 - 30765789
Alignment:
Q  3 ccatcaaacatttaatgctcgcttctttccgaggcatgcacatggctcaaaaattgacttcaatgttacccgctattctcaatgctatttgcttaccttt 102  Q
    |||||||||||| |||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||| || || |||||||||||| |||||||||    
T  30765958 ccatcaaacattcaatgctcgcttcattttgaggcatgcacatggctcaaaaattgacttcaatgttacccactcttttcaatgctatttccttaccttt 30765859  T
Q  103 tgannnnnnnnnnnnnnnnnnnnacgcccatttttctctgatgagagaaagtcatcttccatttcagtcc 172  Q
    |||                    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30765858 tgatcactctctcctctcctctcacgcccatttttctctgatgagagaaagtcatcttccatttcagtcc 30765789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 23216972 - 23216890
Alignment:
Q  3 ccatcaaacatttaatgctcgcttctttccgaggcatgcacatggctcaaaaattgacttcaatgttacccgctattctcaat 85  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||| ||| ||||||| |||||| || ||||||||    
T  23216972 ccatcaaacattcaatgcttgcttctttccgaggcatgcacatggctcaaaatttggcttcaatcttacccactcttctcaat 23216890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 23216814 - 23216774
Alignment:
Q  126 acgcccatttttctctgatgagagaaagtcatcttccattt 166  Q
    |||||||||||||||||||  |||||| |||||||||||||    
T  23216814 acgcccatttttctctgatatgagaaattcatcttccattt 23216774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 33865728 - 33865810
Alignment:
Q  3 ccatcaaacatttaatgctcgcttctttccgaggcatgcacatggctcaaaaattgacttcaatgttacccgctattctcaat 85  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||| ||| ||||||| |||||| || ||||||||    
T  33865728 ccatcaaacattcaatgcttgcttctttccgaggcatgcacatggctcaaaatttggcttcaatcttacccactcttctcaat 33865810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 5790478 - 5790396
Alignment:
Q  3 ccatcaaacatttaatgctcgcttctttccgaggcatgcacatggctcaaaaattgacttcaatgttacccgctattctcaat 85  Q
    |||||||||||| |||||||| |||||||||||  ||||||||||||||||||||| ||| |||||||||| || ||||||||    
T  5790478 ccatcaaacattcaatgctcggttctttccgagatatgcacatggctcaaaaattggcttaaatgttacccactcttctcaat 5790396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 33865880 - 33865920
Alignment:
Q  126 acgcccatttttctctgatgagagaaagtcatcttccattt 166  Q
    |||||||||||||||||||  |||||| |||||||||||||    
T  33865880 acgcccatttttctctgatctgagaaattcatcttccattt 33865920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 5285 - 5365
Alignment:
Q  5 atcaaacatttaatgctcgcttctttccgaggcatgcacatggctcaaaaattgacttcaatgttacccgctattctcaat 85  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| || | || ||||||||    
T  5285 atcaaacattcaatgctcgcttctttctgaggcatgcacatggctcaaaaattggcttcaatgtgactcactcttctcaat 5365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 7134960 - 7135039
Alignment:
Q  3 ccatcaaacatttaatgctcgcttctttccgaggcatgcacatggctcaaaaattgacttcaatgttacccgctattctc 82  Q
    |||||||| ||| |||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||| || |||||    
T  7134960 ccatcaaatattcaatgctcgcttctttctgaggcatgcacatgggtcaaaaattggcttcaatgttacccactcttctc 7135039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 11075011 - 11075081
Alignment:
Q  3 ccatcaaacatttaatgctcgcttctttccgaggcatgcacatggctcaaaaattgacttcaatgttaccc 73  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||| ||| | ||||| ||||||    
T  11075011 ccatcaaacattcaatgcttgcttctttccgaggcatgcacatggctcaaaatttggcatcaatcttaccc 11075081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 11075167 - 11075207
Alignment:
Q  126 acgcccatttttctctgatgagagaaagtcatcttccattt 166  Q
    |||||||||||||||||||  |||||| |||||||||||||    
T  11075167 acgcccatttttctctgatctgagaaattcatcttccattt 11075207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University