View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1185_low_7 (Length: 515)
Name: NF1185_low_7
Description: NF1185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1185_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 52489669 - 52489893
Alignment:
| Q |
30 |
agtctttcctccattggatcatgttggcccacataagctttgctttctcaatatcaaacttccttgctttcaagaatctacaatatcaaaccatgtcatt |
129 |
Q |
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| T |
52489669 |
agtctttcctccattggatcatgttggcccacataagctttgctttctcaatatcaaacttccttgctttcaagaatctacaatatcaaaccatgtcatt |
52489768 |
T |
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| Q |
130 |
acaccagtcaatatgcaaatatgcaaagagatctaggttgtgtatgaatagcttatgc-aaacttatctactggaataagcacttaacaaatgatttgac |
228 |
Q |
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| T |
52489769 |
acaccagtcaatatgcaaatatgcaaagagatctaggttgtgtatgaatagcttatgcaaaacttatctactggaataagcacttaacaaatgatttgac |
52489868 |
T |
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| Q |
229 |
catattttctctttgattattgaaa |
253 |
Q |
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||||||||||||||||||||||||| |
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| T |
52489869 |
catattttctctttgattattgaaa |
52489893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 253 - 437
Target Start/End: Original strand, 52489948 - 52490132
Alignment:
| Q |
253 |
agtaagtaaaggagggataatggcgtgtaacctcaataacatatgatagtcatcatgtattgaaggaagcaagttgtctaatagaagtgtttgtcgaaat |
352 |
Q |
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| T |
52489948 |
agtaagtaaaggagggataatggcgtgtaacctcaataacatatgatagtcatcatgtattgaaggaagcaagttgtctaatagaagtgtttgtcgaaat |
52490047 |
T |
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| Q |
353 |
gcatccactgcatttagctcctcaacttgtcgaacatcctcaatggacaaggaattgctcctactgccactacttttactgcttc |
437 |
Q |
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| T |
52490048 |
gcatccactgcatttagctcctcaacttgtcgaacatcctcaatggacaaggaattgctcctactgccactacttttactgcttc |
52490132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 54781465 - 54781544
Alignment:
| Q |
38 |
ctccattggatcatgttggcccacataagctttgctttctcaatatcaaacttccttgctttcaagaatctacaatatca |
117 |
Q |
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| T |
54781465 |
ctccattgtagcatgtcagcccacatatgctttgctttttcaatatcaaatttccttgctttcagaaatctacaaaatca |
54781544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 7210152 - 7210234
Alignment:
| Q |
32 |
tctttcctccattggatcatgttggcccacataagctttgctttctcaatatcaaacttccttgctttcaagaatctacaata |
114 |
Q |
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| T |
7210152 |
tctttcctccactggatcatgttagcccacatgagctttgccttttcaatatcaaatttcctcgctttcaagaatctgcaata |
7210234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 26638674 - 26638601
Alignment:
| Q |
36 |
tcctccattggatcatgttggcccacataagctttgctttctcaatatcaaacttccttgctttcaagaatcta |
109 |
Q |
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|||||||||||| ||| | |||||||| |||||| ||| ||||| ||||||||||||||| ||||||||||| |
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| T |
26638674 |
tcctccattggagcatatctgcccacatttgctttgttttttcaatgtcaaacttccttgctctcaagaatcta |
26638601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 26671667 - 26671744
Alignment:
| Q |
35 |
ttcctccattggatcatgttggcccacataagctttgctttctcaatatcaaacttccttgctttcaagaatctacaa |
112 |
Q |
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| T |
26671667 |
ttcctccattgtagcatatcagcccacatattctttgctttttcaatatcaaacttccttgctttaagaaatctacaa |
26671744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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