View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11860_high_2 (Length: 749)
Name: NF11860_high_2
Description: NF11860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11860_high_2 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 686; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 16 - 749
Target Start/End: Complemental strand, 51977505 - 51976772
Alignment:
| Q |
16 |
acatcatatagttttggctatatagcacctcgagaaccagaaccagaagtctctccagaaagcataaccccaccagtgtttgctcttttcgaaacaaact |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
51977505 |
acatcatatagttttggctatatagcacctcgagaaccagaaccagaagtctctccagaaagcataaccccaccagtgtttgctcctttcggaacaaact |
51977406 |
T |
|
| Q |
116 |
ttcgagcccacacatgtttcccattgattgaaaatttgactttggaagcccctctcagaatcatatcaatagtactaacattataaaaaacaattctagc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51977405 |
ttcgagcccacacatgtttcccattgattgaaaatttgactttggaagcccctctcagaatcatatcaatagtactaacattataaaaaacaattctagc |
51977306 |
T |
|
| Q |
216 |
aaaaagtgattgttcatttgatgaagtttcttgcataaacaaagcctcaatgcaatctccataagccatagtaaaaaattcttgaacttcccattcttca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51977305 |
aaaaagtgattgttcatttgatgaagtttcttgcataaacaaagcctcaatgcaatctccataagccatagtaaaaaattcttgaacttcccattcttca |
51977206 |
T |
|
| Q |
316 |
acacgataccctctcgaaaatgtcacaaataatgtcctatcatccgccggtatgattcctccttctccattgttgttgctcagttgttgcacaattgcac |
415 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51977205 |
acacgataccccctcgaaaatgtcacaaataatgtcctatcatccgccggtatgattcctccttctccattgttgtttctcagttgttgcacaattgcac |
51977106 |
T |
|
| Q |
416 |
cggcaatcccaaacgaaccgaactgcagatccactggtccaattgaaccataccaaaaattgctgtgctccgccattctctccgctaagtttctcaacat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51977105 |
cggcaatcccaaacgaaccgaactgcagatccactggtccaattgaaccataccaaaaattgctgtgctctgccattctctccgctaagtttctcaacat |
51977006 |
T |
|
| Q |
516 |
cacctgttgcatgatgtcaccaaatgaactcatacaatcttctcttcttgttatctccatcccttcaatcgcttgctcacgattctcaataaagaatctt |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
51977005 |
cacctgttgcatgatgtcaccaaatgaactcatacaatcttctcttcttgttatctccatccctttaatagcttgctcacgattctcaataaagaatctt |
51976906 |
T |
|
| Q |
616 |
ggagaaatttcgtagtccattatgctttgaagcagtggaatatcatttgcttcagaaaatgatattgcaattagggaagtgttattgttgttcgtaagac |
715 |
Q |
| |
|
||||||||||||| |||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51976905 |
ggagaaatttcgttgtccatcaggctttgaagcagtggaatatcatttgcttcagaagatgatattgcaattagggaagtgttattgttgttcgtaagac |
51976806 |
T |
|
| Q |
716 |
aagtgagaaaaatcattgattcaacggcaatgtc |
749 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
51976805 |
aagtgagacaaatcattgattcaacggcaatgtc |
51976772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 56 - 738
Target Start/End: Complemental strand, 51973044 - 51972359
Alignment:
| Q |
56 |
aaccagaagtctctccagaaagcataaccccaccagtgtttgctcttttcgaaacaaactttcgagcccacacatgtttcccattgattgaaaatttgac |
155 |
Q |
| |
|
||||| |||||||||||| || ||||| || || |||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
51973044 |
aaccataagtctctccaggaatcataatcctgccggtgtttgctcttttcggaacaaactttctcacccacacatgtttcccattgatggaaaatttgac |
51972945 |
T |
|
| Q |
156 |
tttggaagcccctctcagaatcatatcaatagtactaacattataaaaaacaattctagcaaaaagtgattgttcatttgatgaagtttcttgcataaac |
255 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||| || |||| ||||||||||||||| ||||||| ||| ||||||| | |||||||||||||||| |
|
|
| T |
51972944 |
tttagaagcccctctcagaatcatgtcaatagtactcaccttatgaaaaacaattctagcgaaaagtggttgctcatttgcttgagtttcttgcataaac |
51972845 |
T |
|
| Q |
256 |
aaagcctcaatgcaatctccataagccatagtaaaaaattcttgaacttcccattcttcaacacgataccctctcgaaaatgtcacaaataatgtcctat |
355 |
Q |
| |
|
|||| |||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
51972844 |
aaagtctcaatacaatctccataagccatgctaaaaaattctttaacttcccattcttcaacacgataccctttcgaaaatgtcacaaacaatgtcctat |
51972745 |
T |
|
| Q |
356 |
catccgccggtatgatt---cctccttctccattgttgttgctcagttgttgcacaattgcaccggcaatcccaaacgaaccgaactgcagatccactgg |
452 |
Q |
| |
|
|||| |||||||| ||| |||| | ||||||||||||||||| |||||||||| |||||||| || ||||||| |||||| || ||||||| || ||| |
|
|
| T |
51972744 |
catctgccggtataattccccctcttcctccattgttgttgctctgttgttgcaccattgcaccagcgatcccaaccgaaccaaattgcagattcattgg |
51972645 |
T |
|
| Q |
453 |
tccaattgaaccataccaaaaattgctgtgctccgccattctctccgctaagtttctcaacatcacctgttgcatgatgtcaccaaatgaactcatacaa |
552 |
Q |
| |
|
|||| | |||||| || ||||| || ||| |||| ||||||| ||||||| |||||||| |||| ||||||||||||||||||| |||| |||||||||| |
|
|
| T |
51972644 |
tccagtcgaaccaaacaaaaaactgttgttctccaccattctatccgctatgtttctcatcatcgcctgttgcatgatgtcacccaatgcactcatacaa |
51972545 |
T |
|
| Q |
553 |
tcttctcttcttgttatctccatcccttcaatcgcttgctcacgattctcaataaagaatcttggagaaatttcgtagtccattatgctttgaagcagtg |
652 |
Q |
| |
|
||||||||||||||| |||||| |||| ||| |||| | ||||||||| || ||||||| | | || ||||| | ||||||| ||||||||| |||| |
|
|
| T |
51972544 |
tcttctcttcttgttttctccacccctcgaattgcttccacacgattctgaagaaagaatttcagcgagatttccttttccattaggctttgaagaagtg |
51972445 |
T |
|
| Q |
653 |
gaatatcatttgcttcagaaaatgatattgcaattagggaagtgttattgttgttcgtaagacaagtgagaaaaatcattgattca |
738 |
Q |
| |
|
||||||||||||||||| || |||| |||||||||| |||| ||| |||||||| ||||||||| ||||| | |||||||||||| |
|
|
| T |
51972444 |
gaatatcatttgcttcataagatgacattgcaattacagaagcgttgttgttgttggtaagacaactgagacatatcattgattca |
51972359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 94 - 738
Target Start/End: Original strand, 17711214 - 17711861
Alignment:
| Q |
94 |
tttgctcttttcgaaacaaactttcgagcccacacatgtttcccattgattgaaaatttgactttggaagcccctctcagaatcatatcaatagtactaa |
193 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | |
|
|
| T |
17711214 |
tttgttcttttcggaacaaactttctgacccacacatgtttcctattgattgaaaatttgactttagaagcccctctcagaatcatgtcaatagtactta |
17711313 |
T |
|
| Q |
194 |
cattataaaaaacaattctagcaaaaagtgattgttcatttgatgaagtttcttgcataaacaaagcctcaatgcaatctccataagccatagtaaaaaa |
293 |
Q |
| |
|
| ||| |||||||||||| || ||||| | ||| ||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| |||||| | |
|
|
| T |
17711314 |
ccatatgaaaaacaattctggcgaaaagcggttgctcatttggttgagtttcttgcataaacaaagcctcaatacaatctccataagccatggtaaaata |
17711413 |
T |
|
| Q |
294 |
ttcttgaacttcccattcttcaacacgataccctctcgaaaatgtcacaaataatgtcctatcatccgccggtatgattcctc--cttc-tccattgttg |
390 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| |||||||||||||||| |||||||| |||||||| |||||||||| || |||| |||||||||| |
|
|
| T |
17711414 |
ttctctaacttcccactcttcaacacgataccctttcgaaaatgtcacaaacaatgtcctctcatccgctggtatgattcttcctcttcttccattgttg |
17711513 |
T |
|
| Q |
391 |
ttgctcagttgttgcacaattgcaccggcaatcccaaacgaaccgaactgcagatccactggtccaattgaaccataccaaaaattgctgtgctccgcca |
490 |
Q |
| |
|
|||||| |||||||||| ||| || | |||||||||| |||||| |||||||||| || ||||||| |||||| || ||||||| ||| |||| ||| |
|
|
| T |
17711514 |
ttgctctgttgttgcaccatttcagctgcaatcccaaccgaaccaaactgcagattcattggtccagccgaaccaaacaaaaaattattgttctccacca |
17711613 |
T |
|
| Q |
491 |
ttctctccgctaagtttctcaacatcacctgttgcatgatgtcaccaaatgaactcatacaatcttctcttcttgttatctccatcccttcaatcgcttg |
590 |
Q |
| |
|
||||||| ||||||||||||| |||| | ||||||||||| |||||||||| |||||||| |||||||||||||| |||||| ||||| ||| |||| |
|
|
| T |
17711614 |
ttctctctgctaagtttctcatcatcgcttgttgcatgatatcaccaaatgccctcatacatacttctcttcttgttttctccaccccttgaattgcttc |
17711713 |
T |
|
| Q |
591 |
ctcacgattctcaataaagaatcttggagaaatttcgtagtccattatgctttgaagcagtggaatatcatttgcttcagaaaatgatattgcaattagg |
690 |
Q |
| |
|
| ||||||| | || ||||||| | |||| ||||| | || |||| |||||||| |||||||||||||||||||||||| |||| |||| || || |
|
|
| T |
17711714 |
cacacgattatgaagaaagaatttcagagagatttcattttctattagactttgaagaagtggaatatcatttgcttcagaagatgacattgaaaataca |
17711813 |
T |
|
| Q |
691 |
gaagtgttattgttgttcgtaagacaagtgagaaaaatcattgattca |
738 |
Q |
| |
|
|||||||||| |||||| |||||||| |||||| | ||||||||||| |
|
|
| T |
17711814 |
gaagtgttatagttgttggtaagacatgtgagacatgtcattgattca |
17711861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 56 - 723
Target Start/End: Original strand, 17726057 - 17726730
Alignment:
| Q |
56 |
aaccagaagtctctccagaaagcataaccccaccagtgtttgctcttttcgaaacaaactttcgagcccacacatgtttcccattgattgaaaatttgac |
155 |
Q |
| |
|
|||||||||||||||||| ||| ||||| | ||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
17726057 |
aaccagaagtctctccaggaagtataactttgtcggtgtttgttcttttcggaacaaactttctgacccacacatgtttcctattgattgaaaatttgac |
17726156 |
T |
|
| Q |
156 |
tttggaagcccctctcagaatcatatcaatagtactaacattataaaaaacaattctagcaaaaagtgattgttcatttgatgaagtttcttgcataaac |
255 |
Q |
| |
|
||| ||||| ||| |||||||||||||||||||||| || |||| ||||| |||||| | ||||||| ||| ||||||| | |||||||||||||||| |
|
|
| T |
17726157 |
tttagaagctcctttcagaatcatatcaatagtactcaccttatgaaaaataattcttccgaaaagtggttgctcatttggttgagtttcttgcataaac |
17726256 |
T |
|
| Q |
256 |
aaagcctcaatgcaatctccataagccatagtaaaaaattcttgaacttcccattcttcaacacgataccctctcgaaaatgtcacaaataatgtcctat |
355 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| |||||||| | |
|
|
| T |
17726257 |
aaagtctcaatacaatctccataagccatagtaaaaaattctctaacttcccactcttcaacacgataccctttcgaaaatgtcacaaacaatgtcctct |
17726356 |
T |
|
| Q |
356 |
catccgccggtatgattcctcc---ttctccattgttgttgctcagttgttgcacaattgcaccggcaatcccaaacgaaccgaactgcagatccactgg |
452 |
Q |
| |
|
||||||| |||||||||||||| | |||||||||||||||| |||||||| | | |||||| |||||||||| |||||| |||||||||| | ||| |
|
|
| T |
17726357 |
catccgctggtatgattcctcctcttcctccattgttgttgctatgttgttgccctagtgcacctgcaatcccaaccgaaccaaactgcagatttattgg |
17726456 |
T |
|
| Q |
453 |
tccaattgaaccataccaaaaattgctgtgctccgccattctctccgctaagtttctcaacatcacctgttgcatgatgtcaccaaatgaactcatacaa |
552 |
Q |
| |
|
|||| | |||||| || ||||||| ||| |||| |||||||||| |||| |||||||| |||| || |||||||||| |||||||||| |||||||| |
|
|
| T |
17726457 |
tccagtcgaaccaaacaaaaaattattgttctccaccattctctctgctatgtttctcatcatcgcccgttgcatgatatcaccaaatgccctcatacat |
17726556 |
T |
|
| Q |
553 |
tcttctcttcttgttatctccatcccttcaatcgcttgctcacgattctcaataaagaatcttggagaaatttcgtagtccattatgctttgaagcagtg |
652 |
Q |
| |
|
||||| |||||||| |||||| ||| | ||| |||| | | ||||| | ||||||| | |||| ||||| | ||||||| ||| ||||| |||| |
|
|
| T |
17726557 |
acttcttttcttgttttctccaccccatgaattgcttccatgcaattctgacgaaagaatttcagagagatttcattttccattacgctctgaagaagtg |
17726656 |
T |
|
| Q |
653 |
gaatatcatttgcttcagaaaatga---tattgcaattagggaagtgttattgttgttcgtaagacaagtgaga |
723 |
Q |
| |
|
|||||||||||||||||||| || | ||||| | ||||||| |||||| ||||||| |||||||| |||||| |
|
|
| T |
17726657 |
gaatatcatttgcttcagaagataacattattgtagttagggaggtgttactgttgttggtaagacatgtgaga |
17726730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 205; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 92 - 740
Target Start/End: Original strand, 40783600 - 40784254
Alignment:
| Q |
92 |
tgtttgctcttttcgaaacaaactttcgagcccacacatgtttcccattgattgaaaatttgactttggaagcccctctcagaatcatatcaatagtact |
191 |
Q |
| |
|
||||| ||||||| | ||||||||| || ||||| | |||||| |||||||| |||||||| |||| ||| ||||||||||||||||||||||||| |
|
|
| T |
40783600 |
tgtttactctttttggaacaaacttacgggcccatatatgttttccattgataaaaaatttggctttagaatgccctctcagaatcatatcaatagtatc |
40783699 |
T |
|
| Q |
192 |
aacattataaaaaacaattctagcaaaaagtgattgttcatttgatgaagtttcttgcataaacaaagcctcaatgcaatctccataagccatagt-aaa |
290 |
Q |
| |
|
|| |||| |||||||||||||| ||||||| ||||||||||| || ||||| ||||||||||||||| ||||| |||||||||||| ||||||| ||| |
|
|
| T |
40783700 |
caccttatgtaaaacaattctagcgaaaagtgcttgttcatttggtgcagttttttgcataaacaaagcttcaatacaatctccataaaccatagtgaaa |
40783799 |
T |
|
| Q |
291 |
aaattcttgaacttcccattcttcaacacgataccctctcgaaaatgtcacaaataatgtcctatcatccgccggtatgattcctccttctc------ca |
384 |
Q |
| |
|
|| ||||| ||||||||||||||||||| || ||||| |||||||||||||||| ||||||||||| || |||||||||||| ||||| ||| || |
|
|
| T |
40783800 |
aagttctt-aacttcccattcttcaacatgacaccctttcgaaaatgtcacaaacaatgtcctatcttctgccggtatgatttctcctcctcttccttca |
40783898 |
T |
|
| Q |
385 |
ttgttgttgctcagttgttgcacaattgcaccggcaatcccaaacgaaccgaactgcagatccactggtccaattgaaccataccaaaaattgctgtgct |
484 |
Q |
| |
|
||||||||| | ||||||||||||||||||| |||||| || | |||||||||||||| | | ||||||||||||||| ||||||||||| ||| | |
|
|
| T |
40783899 |
ttgttgttgttttgttgttgcacaattgcaccatcaatcctaactggaccgaactgcagattcgccggtccaattgaaccaaaccaaaaattgttgttat |
40783998 |
T |
|
| Q |
485 |
ccgccattctctccgctaagtttctcaacatcacctgttgcatgatgtcaccaaatgaactcatacaatcttctcttcttgttatctccatcccttcaat |
584 |
Q |
| |
|
| |||||| | | | |||||||| ||| |||||||||||||||||| |||| ||||||||| ||||| || ||| |||| | |||| ||| |
|
|
| T |
40783999 |
tcatcattctatgtgtcatgtttctcattatcgcctgttgcatgatgtcactcaatgctctcatacaaacttctttttctgtcttctcaacccctcgaat |
40784098 |
T |
|
| Q |
585 |
cgcttgctcacgattctcaataaagaatcttggagaaatttcgtagtccattatgctttgaagcagtggaatatcatttgcttcagaaaatgatattgca |
684 |
Q |
| |
|
|||| | |||||||||||| ||||||| || |||| ||||| | |||||| | ||||||||| ||||||||||||||| ||||| || ||||| || | |
|
|
| T |
40784099 |
tgcttccacacgattctcaagaaagaattttagagagatttctttgtccatcaggctttgaagaagtggaatatcattttcttcataatatgatttttcg |
40784198 |
T |
|
| Q |
685 |
attagggaagtgttattgttgttcgtaagacaagtgagaaaaatcattgattcaac |
740 |
Q |
| |
|
||| ||||||||||||||||||| |||| |||| ||||| | |||||||||||||| |
|
|
| T |
40784199 |
atttgggaagtgttattgttgttggtaatacaactgagacacatcattgattcaac |
40784254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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