View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11860_high_4 (Length: 579)
Name: NF11860_high_4
Description: NF11860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11860_high_4 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 270 - 575
Target Start/End: Original strand, 8004796 - 8005100
Alignment:
| Q |
270 |
gccacataaggatggtagaggagtggtatgccacctatgggtgtttagctgtcatcactctctttttctttttgaagnnnnnnntgttactactataaat |
369 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||| ||||| ||| ||| ||||||||||||||| |
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| T |
8004796 |
gccacataagggtggtagaggagtggtatgccacctatgggtgtttacctatcatcactcttttttttttt---aaggaaaaaatgttactactataaac |
8004892 |
T |
|
| Q |
370 |
gtgtggtgtggtggtcctatgatataagttcatattattattat---ataacttcatcaaggacaaggacaaaacgtgtggtgataaaagttcatagtat |
466 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| || |
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| T |
8004893 |
gtgtggtgtggtggtcctatgatataagtttatattattattattatataacttcatcaaggacaaggacaaaacgtgtgatgataaa-gttcatagcat |
8004991 |
T |
|
| Q |
467 |
tatattatattaattcagaaaggacaaagtcataaaacgtgtggtggtggtggtcatgttttaggacaaaacacgaagcagcaaagcagaggaacagaaa |
566 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8004992 |
tatattatattaattcagaaaggacaaagtcacaaaacgtgtggtggtggtggtcatgtttttggacaaaacacgaagcagcaaagcagaggaacagaaa |
8005091 |
T |
|
| Q |
567 |
cggcgacgg |
575 |
Q |
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||||||||| |
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| T |
8005092 |
cggcgacgg |
8005100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 8004665 - 8004774
Alignment:
| Q |
126 |
aatggtaacagtggattacaaagaaagctaatgaacctcaataatggtcaattgtagtaacttaaagcaattaacagagagag--ggggtttgaggagag |
223 |
Q |
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| T |
8004665 |
aatggtagcattggattataaagaaagctaataaacctcaataatggtcaattgtagtaacttaaagcaattaacagagagagaaggggtttgaggagag |
8004764 |
T |
|
| Q |
224 |
aagaggtctg |
233 |
Q |
| |
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|||||||||| |
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| T |
8004765 |
aagaggtctg |
8004774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 8004547 - 8004627
Alignment:
| Q |
7 |
ggagcagagacatatcatatgttcatcaatatacaaacagttgcaactacatgatccattacttccttatatagtctcaaa |
87 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
8004547 |
ggagaagagacatatcttatgttcatcaatatacaaacagttgcaactacatgatccattacttcgttgtatagtctcaaa |
8004627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 354 - 575
Target Start/End: Original strand, 40173956 - 40174177
Alignment:
| Q |
354 |
tgttactactataaatgtgtggtgtggtggtcctatgatataagttcatattattattatataacttcatcaaggacaaggacaaaacgtgtggtgataa |
453 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40173956 |
tgttaccactataaacgtgtggtgtggtggtcctatgatataagttcatattattattatataacttcatcaaggaaaaggacaaaacgtgtggtgataa |
40174055 |
T |
|
| Q |
454 |
aagttcatagtattatattatattaattcagaaaggacaaagtcataaaacgtgtggtggtggtggtcatgttttaggacaaaacacgaagcagcaaagc |
553 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40174056 |
aagttcatagtattatattatatgaattcagaaaggacaaagtcacaaaatgtgtggtggtggtggtcatgtttttggacaaaacacgaagcagcaaagc |
40174155 |
T |
|
| Q |
554 |
agaggaacagaaacggcgacgg |
575 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
40174156 |
agaggaacagaaacggcgacgg |
40174177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 5197343 - 5197423
Alignment:
| Q |
7 |
ggagcagagacatatcatatgttcatcaatatacaaacagttgcaactacatgatccattacttccttatatagtctcaaa |
87 |
Q |
| |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5197343 |
ggagaagagacaaatcatatgttcatcaatatacaaacagttgcaactacatgatccattacttccttgtatagtctcaaa |
5197423 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 5197461 - 5197567
Alignment:
| Q |
126 |
aatggtaacagtggattacaaagaaagctaatgaacctcaataatggtcaattgtagtaacttaaagcaattaacagagagagggggtttgaggagagaa |
225 |
Q |
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||||||| ||| ||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
5197461 |
aatggtatgagtcgattacaaagaaagctaataaacctcattaatgctcaattgcagtaacttaaagcaattaacagaaaga-ggggtttgaggagagaa |
5197559 |
T |
|
| Q |
226 |
gaggtctg |
233 |
Q |
| |
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|||||||| |
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| T |
5197560 |
gaggtctg |
5197567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 5197592 - 5197650
Alignment:
| Q |
272 |
cacataaggatggtagaggagtggtatgccacctatgggtgtttagctgtcatcactct |
330 |
Q |
| |
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||||||||| ||||| ||||||||||||||||||||| ||||||| || |||||||||| |
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| T |
5197592 |
cacataagggtggtaaaggagtggtatgccacctatgagtgtttacctatcatcactct |
5197650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 458 - 575
Target Start/End: Original strand, 27968 - 28085
Alignment:
| Q |
458 |
tcatagtattatattatattaattcagaaaggacaaagtcataaaacgtgtggtggtggtggtcatgttttaggacaaaacacgaagcagcaaagcagag |
557 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27968 |
tcatagtattatattatattaattcagaaaggacaaagtcacaaaatgtgtggtggtggtggtcatgtttttggacaaaacacgaagcagcaaagcagag |
28067 |
T |
|
| Q |
558 |
gaacagaaacggcgacgg |
575 |
Q |
| |
|
||||| |||||||||||| |
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| T |
28068 |
gaacataaacggcgacgg |
28085 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 55038579 - 55038473
Alignment:
| Q |
126 |
aatggtaacagtggattacaaagaaagctaatgaacctcaataatggtcaattgtagtaacttaaagcaattaacagagagagggggtttgaggagagaa |
225 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||||| |||||||||| |||||| |
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| T |
55038579 |
aatggtataagtggattacaaagaaagctaataaacctcattaatggtcaattgtagtaacttaaaacaattaagagagaga-ggggtttgagaagagaa |
55038481 |
T |
|
| Q |
226 |
gaggtctg |
233 |
Q |
| |
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|||||||| |
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|
| T |
55038480 |
gaggtctg |
55038473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 55038697 - 55038617
Alignment:
| Q |
7 |
ggagcagagacatatcatatgttcatcaatatacaaacagttgcaactacatgatccattacttccttatatagtctcaaa |
87 |
Q |
| |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
55038697 |
ggagaagagacagatcatatgttcatcaatatacaaacagttgcaactacatgatccattacttccttgtatagtctcaaa |
55038617 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 1176486 - 1176592
Alignment:
| Q |
126 |
aatggtaacagtggattacaaagaaagctaatgaacctcaataatggtcaattgtagtaacttaaagcaattaacagagagagggggtttgaggagagaa |
225 |
Q |
| |
|
||||||| |||||| |||||||||||||||| ||||||| ||||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||| |
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|
| T |
1176486 |
aatggtatgagtggactacaaagaaagctaataaacctcattaatgctcaattgcagtaacttaaagcaattaacggagaga-ggggtttgaggagagaa |
1176584 |
T |
|
| Q |
226 |
gaggtctg |
233 |
Q |
| |
|
|||||||| |
|
|
| T |
1176585 |
gaggtctg |
1176592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 1176373 - 1176448
Alignment:
| Q |
12 |
agagacatatcatatgttcatcaatatacaaacagttgcaactacatgatccattacttccttatatagtctcaaa |
87 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
1176373 |
agagacagattatatgttcatcaatatacaaacagttgcaactacatgatccattacttccttgtatagtctcaaa |
1176448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 1176609 - 1176667
Alignment:
| Q |
270 |
gccacataaggatggtagaggagtggtatgccacctatgggtgtttagctgtcatcact |
328 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
1176609 |
gccacataagggtggtagaggagtggtatgccacctatgggtgtttacctatcatcact |
1176667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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