View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11860_high_6 (Length: 428)

Name: NF11860_high_6
Description: NF11860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11860_high_6
NF11860_high_6
[»] chr8 (2 HSPs)
chr8 (140-417)||(15775710-15775987)
chr8 (145-294)||(15775884-15776032)
[»] chr4 (2 HSPs)
chr4 (140-417)||(24813123-24813400)
chr4 (145-294)||(24813078-24813226)
[»] chr5 (2 HSPs)
chr5 (140-417)||(13178078-13178355)
chr5 (145-294)||(13178033-13178181)
[»] chr2 (2 HSPs)
chr2 (140-417)||(3790872-3791149)
chr2 (230-294)||(3791130-3791194)
[»] chr7 (2 HSPs)
chr7 (140-294)||(3452501-3452655)
chr7 (140-291)||(26267899-26268050)


Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 140 - 417
Target Start/End: Original strand, 15775710 - 15775987
Alignment:
Q  140 cacccctgttaccttgtgagccagtgcagtttggccagtttccacctttcaaactaagatgacgtcaagtcagtttcaaattcttatttcaatctccagt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15775710 cacccctgttaccttgtgagccagtgcagtttggccagtttccacctttcaaactaagatgacgtcaagtcagtttcaaattcttatttcaatctccagt 15775809  T
Q  240 gattcccatacatgttcggataagtggctagttcagtccaagaacagcttgtcccagtcaacttacttctacctctgttatcctgtgagccggtgcagtt 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15775810 gattcccatacatgttcggataagtggctagttcagtccaagaacagcttgtcccagtcaacttacttctacctctgttatcctgtgagccggtgcagtt 15775909  T
Q  340 tggccaattgctacctttcaaatcaggacgacgtcaagtcaattctaatcccattacaaatccccagtgatgtccatc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15775910 tggccaattgctacctttcaaatcaggacgacgtcaagtcaattctaatcccattacaaatccccagtgatttccatc 15775987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 145 - 294
Target Start/End: Original strand, 15775884 - 15776032
Alignment:
Q  145 ctgttaccttgtgagccagtgcagtttggccagtttccacctttcaaactaagatgacgtcaagtcagtttcaaattcttatttcaa-tctccagtgatt 243  Q
    |||||| | |||||||| |||||||||||||| || | ||||||||||  | || |||||||||||| ||  ||  ||  ||| ||| || |||||||||    
T  15775884 ctgttatcctgtgagccggtgcagtttggccaattgctacctttcaaatcaggacgacgtcaagtcaattctaa--tcccattacaaatccccagtgatt 15775981  T
Q  244 cccatacatgttcggataagtggctagttcagtccaagaacagcttgtccc 294  Q
     |||| |||||| |||||||||||||||||| ||||||||||| |||||||    
T  15775982 tccatccatgtttggataagtggctagttcaatccaagaacagtttgtccc 15776032  T

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Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 140 - 417
Target Start/End: Complemental strand, 24813400 - 24813123
Alignment:
Q  140 cacccctgttaccttgtgagccagtgcagtttggccagtttccacctttcaaactaagatgacgtcaagtcagtttcaaattcttatttcaatctccagt 239  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24813400 cacccctgttaccttgtgagccagtgcagtttggccactttccacctttcaaactaagatgacgtcaagtcagtttcaaattcttatttcaatctccagt 24813301  T
Q  240 gattcccatacatgttcggataagtggctagttcagtccaagaacagcttgtcccagtcaacttacttctacctctgttatcctgtgagccggtgcagtt 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24813300 gattcccatacatgttcggataagtggctagttcagtccaagaacagcttgtcccagtcaacttacttctacctctgttatcctgtgagccggtgcagtt 24813201  T
Q  340 tggccaattgctacctttcaaatcaggacgacgtcaagtcaattctaatcccattacaaatccccagtgatgtccatc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24813200 tggccaattgctacctttcaaatcaggacgacgtcaagtcaattctaatcccattacaaatccccagtgatttccatc 24813123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 145 - 294
Target Start/End: Complemental strand, 24813226 - 24813078
Alignment:
Q  145 ctgttaccttgtgagccagtgcagtttggccagtttccacctttcaaactaagatgacgtcaagtcagtttcaaattcttatttcaa-tctccagtgatt 243  Q
    |||||| | |||||||| |||||||||||||| || | ||||||||||  | || |||||||||||| ||  ||  ||  ||| ||| || |||||||||    
T  24813226 ctgttatcctgtgagccggtgcagtttggccaattgctacctttcaaatcaggacgacgtcaagtcaattctaa--tcccattacaaatccccagtgatt 24813129  T
Q  244 cccatacatgttcggataagtggctagttcagtccaagaacagcttgtccc 294  Q
     |||| |||||| |||||||||||||||||| |||||||||||||||||||    
T  24813128 tccatccatgtttggataagtggctagttcaatccaagaacagcttgtccc 24813078  T

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Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 140 - 417
Target Start/End: Complemental strand, 13178355 - 13178078
Alignment:
Q  140 cacccctgttaccttgtgagccagtgcagtttggccagtttccacctttcaaactaagatgacgtcaagtcagtttcaaattcttatttcaatctccagt 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13178355 cacccctgttaccttgtgagccagtgcagtttggccagtttccacctttcaaactaagatgatgtcaagtcagtttcaaattcttatttcaatctccagt 13178256  T
Q  240 gattcccatacatgttcggataagtggctagttcagtccaagaacagcttgtcccagtcaacttacttctacctctgttatcctgtgagccggtgcagtt 339  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13178255 gattcccatacatgttcggataagtggctagttcagttcaagaacagcttgtcccagtcaacttacttctacctctgttatcctgtgagccggtgcagtt 13178156  T
Q  340 tggccaattgctacctttcaaatcaggacgacgtcaagtcaattctaatcccattacaaatccccagtgatgtccatc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13178155 tggccaattgctacctttcaaatcaggacgacgtcaagtcaattctaatcccattacaaatccccagtgatttccatc 13178078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 145 - 294
Target Start/End: Complemental strand, 13178181 - 13178033
Alignment:
Q  145 ctgttaccttgtgagccagtgcagtttggccagtttccacctttcaaactaagatgacgtcaagtcagtttcaaattcttatttcaa-tctccagtgatt 243  Q
    |||||| | |||||||| |||||||||||||| || | ||||||||||  | || |||||||||||| ||  ||  ||  ||| ||| || |||||||||    
T  13178181 ctgttatcctgtgagccggtgcagtttggccaattgctacctttcaaatcaggacgacgtcaagtcaattctaa--tcccattacaaatccccagtgatt 13178084  T
Q  244 cccatacatgttcggataagtggctagttcagtccaagaacagcttgtccc 294  Q
     |||| |||||| |||||||||||||||||| |||||||||||||||||||    
T  13178083 tccatccatgtttggataagtggctagttcaatccaagaacagcttgtccc 13178033  T

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Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 140 - 417
Target Start/End: Original strand, 3790872 - 3791149
Alignment:
Q  140 cacccctgttaccttgtgagccagtgcagtttggccagtttccacctttcaaactaagatgacgtcaagtcagtttcaaattcttatttcaatctccagt 239  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3790872 cacccctgttaccttgtgagccagtgcagtttggccaggttccacctttcaaactaagatgacgtcaagtcagtttcaaattcttatttcaatctccagt 3790971  T
Q  240 gattcccatacatgttcggataagtggctagttcagtccaagaacagcttgtcccagtcaacttacttctacctctgttatcctgtgagccggtgcagtt 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3790972 gattcccatacatgttcggataagtggctagttcagtccaagaacagcttgtcccagtcaacttacttctacctctgttatcctatgagccggtgcagtt 3791071  T
Q  340 tggccaattgctacctttcaaatcaggacgacgtcaagtcaattctaatcccattacaaatccccagtgatgtccatc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3791072 tggccaattgctacctttcaaatcaggacgacgtcaagtcaattctaatcccattacaaatccccagtgatttccatc 3791149  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 3791130 - 3791194
Alignment:
Q  230 aatctccagtgattcccatacatgttcggataagtggctagttcagtccaagaacagcttgtccc 294  Q
    |||| ||||||||| |||| |||||| |||||||||||||||||| |||||||||||||||||||    
T  3791130 aatccccagtgatttccatccatgtttggataagtggctagttcaatccaagaacagcttgtccc 3791194  T

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Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 140 - 294
Target Start/End: Original strand, 3452501 - 3452655
Alignment:
Q  140 cacccctgttaccttgtgagccagtgcagtttggccagtttccacctttcaaactaagatgacgtcaagtcagtttcaaattcttatttcaatctccagt 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3452501 cacccctgttaccttgtgagccagtgcagtttggccagtttccacctttcaaactaagatgacgtcaagtcagtttcaaattcttatttcaatccccagt 3452600  T
Q  240 gattcccatacatgttcggataagtggctagttcagtccaagaacagcttgtccc 294  Q
    |||| |||| |||||| |||||||||||||||||| |||||||||||||||||||    
T  3452601 gatttccatccatgtttggataagtggctagttcaatccaagaacagcttgtccc 3452655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 140 - 291
Target Start/End: Complemental strand, 26268050 - 26267899
Alignment:
Q  140 cacccctgttaccttgtgagccagtgcagtttggccagtttccacctttcaaactaagatgacgtcaagtcagtttcaaattcttatttcaatctccagt 239  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26268050 cacccctattaccttgtgagccagtgcagtttggccagtttccacctttcaaactaagatgacgtcaagtcagtttcaaattcttatttcaatccccagt 26267951  T
Q  240 gattcccatacatgttcggataagtggctagttc-agtccaagaacagcttgt 291  Q
    || |    | | |||||||  ||||||||||||| ||||||||||||||||||    
T  26267950 gaatatgtttc-tgttcggtcaagtggctagttcaagtccaagaacagcttgt 26267899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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