View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11860_high_7 (Length: 360)
Name: NF11860_high_7
Description: NF11860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11860_high_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 6 - 360
Target Start/End: Complemental strand, 23453268 - 23452914
Alignment:
| Q |
6 |
gctggttcttttttgtatcatactgatgaaattaatgatatatggatttgaaaatgtttgtattgttcaatttggttgttgatgcatctgtttaaatttt |
105 |
Q |
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| T |
23453268 |
gctggttcttttttgtatcatattgatgaaattaatgatatatggctttgaaaatgtttgtattgttcaatttggttgttggtgcatctgtttaaatttt |
23453169 |
T |
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| Q |
106 |
atcagaaagcatgagttctggaatttggttaaccgtaaaaactgttacacagcttagtttgctctgattcaattatatatctagatatcgtgtgcttatg |
205 |
Q |
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| T |
23453168 |
atcagaaagcatgagttctggaattttgttaaccgtaaaaactgttacacagcttagtttgctctgattcaattatatatctagatatcgtgtgcttatg |
23453069 |
T |
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| Q |
206 |
atgagaaatctgactgttcacattaacttagtttgctcgcgtcatggatgaagcaagacaattaggttgtannnnnnngtttgaaaaccagctggttgta |
305 |
Q |
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| T |
23453068 |
atgagaaatctgactgttcacattaacttagtttgcttgcgtcatggatgaagcaagacaattaggttgtaattttttgtttgaaaaccagctggttgta |
23452969 |
T |
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| Q |
306 |
attgattgtaatctatgaataaattttacagaatctgtgtatattgtaaagattt |
360 |
Q |
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| T |
23452968 |
attgattgtaatctatgaataaattttacagaatctgtgtatattgtaaagattt |
23452914 |
T |
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