View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11860_high_8 (Length: 319)

Name: NF11860_high_8
Description: NF11860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11860_high_8
NF11860_high_8
[»] chr3 (3 HSPs)
chr3 (155-309)||(34142791-34142945)
chr3 (18-92)||(34143008-34143082)
chr3 (43-89)||(8584449-8584495)
[»] chr4 (5 HSPs)
chr4 (24-92)||(15039936-15040004)
chr4 (24-92)||(15041665-15041733)
chr4 (24-92)||(15112691-15112759)
chr4 (24-92)||(15114420-15114488)
chr4 (28-92)||(16003524-16003587)
[»] chr7 (2 HSPs)
chr7 (24-88)||(10866295-10866359)
chr7 (24-88)||(10868012-10868076)
[»] chr6 (3 HSPs)
chr6 (24-92)||(34244754-34244822)
chr6 (26-92)||(30580020-30580085)
chr6 (28-71)||(13214034-13214076)
[»] chr8 (1 HSPs)
chr8 (24-89)||(30187783-30187848)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 155 - 309
Target Start/End: Complemental strand, 34142945 - 34142791
Alignment:
Q  155 gttatctcaataatgttcaaaaaggaaattctagagtgccagttttctgaaggcttcggtatgacagttcacagaatagcttctttttctttttgttgat 254  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34142945 gttatctcaacaatgttcaaaaaggaaattctagagtgccagttttctgaaggcttcggtatgacaattcacagaatagcttctttttctttttgttgat 34142846  T
Q  255 gactcagataaattttgtacaacttggtttgtttcacacactaatatagggctct 309  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  34142845 gactcagataaattttgtacaacttggtttgtttcacacaccaatacagggctct 34142791  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 34143082 - 34143008
Alignment:
Q  18 aattagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34143082 aattagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 34143008  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 8584495 - 8584449
Alignment:
Q  43 atgagtacatggttggtccttttatagaactcaattaccctaactac 89  Q
    |||||||||||||||||||||||||||| |||||||  |||||||||    
T  8584495 atgagtacatggttggtccttttatagacctcaattttcctaactac 8584449  T

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Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 15039936 - 15040004
Alignment:
Q  24 attgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 92  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  15039936 attgaaaaagattacatgaatgagtacatggttggtccttttatagacctcaatgaccctaactacttg 15040004  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 15041665 - 15041733
Alignment:
Q  24 attgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 92  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  15041665 attgaaaaagattacatgaatgagtacatggttggtccttttatagacctcaatgaccctaactacttg 15041733  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 15112759 - 15112691
Alignment:
Q  24 attgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 92  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  15112759 attgaaaaagattacatgaatgagtacatggttggtccttttatagacctcaatgaccctaactacttg 15112691  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 15114488 - 15114420
Alignment:
Q  24 attgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 92  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  15114488 attgaaaaagattacatgaatgagtacatggttggtccttttatagacctcaatgaccctaactacttg 15114420  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 16003587 - 16003524
Alignment:
Q  28 aaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 92  Q
    |||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  16003587 aaaaagattg-atgaatgagtatatggttggtccttttatagacctcaattaccctaactacttg 16003524  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 10866359 - 10866295
Alignment:
Q  24 attgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaacta 88  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  10866359 attgaaaaagattacatgaatgagtacatggttggtccttttataaatctcaattaccctaacta 10866295  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 10868076 - 10868012
Alignment:
Q  24 attgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaacta 88  Q
    |||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10868076 attgaaaaagattatatgaatgagtacatggttggtccttttatagacctcaattaccctaacta 10868012  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 34244822 - 34244754
Alignment:
Q  24 attgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 92  Q
    |||||||||||||  ||||||||||| |||||||||||||||||||| |||||| ||| ||||||||||    
T  34244822 attgaaaaagattatatgaatgagtatatggttggtccttttatagacctcaatgaccttaactacttg 34244754  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 30580020 - 30580085
Alignment:
Q  26 tgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 92  Q
    |||||||||||| |||||||||| |||||||| || | ||||||| |||||||||||||||||||||    
T  30580020 tgaaaaagattg-atgaatgagttcatggttgatcatattatagacctcaattaccctaactacttg 30580085  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 13214034 - 13214076
Alignment:
Q  28 aaaaagattgcatgaatgagtacatggttggtccttttatagaa 71  Q
    |||||||||| |||||| ||||||||||||||||||||||||||    
T  13214034 aaaaagattg-atgaataagtacatggttggtccttttatagaa 13214076  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 30187783 - 30187848
Alignment:
Q  24 attgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactac 89  Q
    ||||||||| ||| |||||||||||||||| |||||||||||||||| ||||||| || |||||||    
T  30187783 attgaaaaaaattacatgaatgagtacatgattggtccttttatagacctcaatttccttaactac 30187848  T

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