View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11860_low_1 (Length: 1244)

Name: NF11860_low_1
Description: NF11860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11860_low_1
NF11860_low_1
[»] chr4 (34 HSPs)
chr4 (1-1228)||(55668555-55669794)
chr4 (3-109)||(47188721-47188827)
chr4 (3-112)||(45688687-45688796)
chr4 (7-112)||(34316783-34316888)
chr4 (3-108)||(50514669-50514774)
chr4 (3-107)||(23765527-23765631)
chr4 (16-112)||(2362573-2362669)
chr4 (1-81)||(35808450-35808530)
chr4 (1-109)||(41956267-41956375)
chr4 (3-85)||(51266895-51266977)
chr4 (3-80)||(20811239-20811316)
chr4 (3-107)||(30475374-30475478)
chr4 (3-110)||(19328984-19329086)
chr4 (3-110)||(26040416-26040523)
chr4 (1-108)||(54339061-54339168)
chr4 (1-84)||(27839360-27839443)
chr4 (3-110)||(34016572-34016678)
chr4 (3-80)||(31754914-31754991)
chr4 (5-81)||(10100171-10100247)
chr4 (3-109)||(31168081-31168187)
chr4 (3-94)||(33951662-33951753)
chr4 (4-98)||(9693528-9693622)
chr4 (3-110)||(45088020-45088120)
chr4 (3-108)||(26831842-26831946)
chr4 (8-103)||(20456522-20456617)
chr4 (1-75)||(52341582-52341656)
chr4 (5-75)||(53567011-53567081)
chr4 (3-64)||(32131134-32131195)
chr4 (5-81)||(40436056-40436132)
chr4 (8-85)||(15986237-15986314)
chr4 (3-65)||(3769804-3769866)
chr4 (3-65)||(35675246-35675308)
chr4 (8-85)||(30617920-30617997)
chr4 (68-109)||(50620715-50620756)
[»] chr1 (40 HSPs)
chr1 (3-109)||(27209774-27209880)
chr1 (3-109)||(22346290-22346396)
chr1 (1-109)||(6170602-6170710)
chr1 (3-109)||(7190528-7190634)
chr1 (3-110)||(4940793-4940900)
chr1 (3-110)||(49508786-49508893)
chr1 (3-75)||(33929947-33930019)
chr1 (3-107)||(43433724-43433828)
chr1 (3-84)||(11385953-11386034)
chr1 (3-75)||(34874548-34874620)
chr1 (3-107)||(47895283-47895387)
chr1 (1-84)||(41147529-41147612)
chr1 (3-74)||(47655424-47655495)
chr1 (3-85)||(24140744-24140826)
chr1 (1-85)||(50154444-50154528)
chr1 (1-64)||(42607375-42607438)
chr1 (3-110)||(45721701-45721805)
chr1 (3-75)||(28277535-28277607)
chr1 (3-75)||(49901907-49901979)
chr1 (5-80)||(932212-932287)
chr1 (5-86)||(11385865-11385946)
chr1 (3-71)||(50295486-50295555)
chr1 (8-108)||(14331785-14331885)
chr1 (8-108)||(44359730-44359830)
chr1 (1-75)||(29966803-29966878)
chr1 (6-110)||(31975437-31975537)
chr1 (1-75)||(26469633-26469707)
chr1 (3-112)||(28850963-28851076)
chr1 (10-108)||(43168089-43168187)
chr1 (3-85)||(52396414-52396496)
chr1 (3-112)||(2125760-2125869)
chr1 (1-64)||(44286864-44286927)
chr1 (1-109)||(8244044-8244147)
chr1 (3-75)||(40845228-40845304)
chr1 (3-49)||(32213942-32213988)
chr1 (45-75)||(9055907-9055937)
chr1 (14-108)||(48938584-48938678)
chr1 (3-52)||(4656020-4656069)
chr1 (3-63)||(30222613-30222674)
chr1 (5-38)||(46296240-46296273)
[»] chr2 (31 HSPs)
chr2 (1-110)||(6999148-6999257)
chr2 (3-107)||(39085848-39085952)
chr2 (3-110)||(2966486-2966593)
chr2 (3-86)||(862559-862642)
chr2 (137-275)||(9214583-9214721)
chr2 (3-85)||(16361537-16361619)
chr2 (3-105)||(23685708-23685810)
chr2 (3-96)||(27495083-27495176)
chr2 (3-86)||(17056113-17056196)
chr2 (3-86)||(17068560-17068643)
chr2 (3-86)||(41436448-41436531)
chr2 (5-106)||(1321117-1321219)
chr2 (8-112)||(39401595-39401693)
chr2 (3-106)||(9201551-9201653)
chr2 (3-86)||(17074543-17074626)
chr2 (3-85)||(17095122-17095204)
chr2 (7-82)||(11445379-11445454)
chr2 (1-92)||(17118427-17118517)
chr2 (1-59)||(17603808-17603866)
chr2 (1-81)||(464770-464850)
chr2 (3-55)||(765206-765258)
chr2 (3-81)||(44299737-44299815)
chr2 (3-75)||(35445346-35445419)
chr2 (3-75)||(15004908-15004980)
chr2 (1-106)||(44173070-44173174)
chr2 (5-81)||(33726355-33726431)
chr2 (5-109)||(33864303-33864406)
chr2 (8-111)||(11659207-11659310)
chr2 (1-59)||(13997958-13998016)
chr2 (70-112)||(6084650-6084692)
chr2 (1-66)||(2239572-2239637)
[»] chr3 (27 HSPs)
chr3 (3-110)||(44570442-44570549)
chr3 (5-112)||(10854803-10854910)
chr3 (1-108)||(12050986-12051093)
chr3 (1-110)||(46317433-46317541)
chr3 (3-87)||(36730209-36730293)
chr3 (3-111)||(51817368-51817476)
chr3 (3-111)||(8715557-8715667)
chr3 (3-111)||(9067444-9067554)
chr3 (1-108)||(31647253-31647359)
chr3 (5-110)||(29915633-29915738)
chr3 (5-110)||(29964786-29964891)
chr3 (5-108)||(32415518-32415620)
chr3 (1-80)||(12905336-12905415)
chr3 (3-75)||(4759906-4759978)
chr3 (3-85)||(35306303-35306385)
chr3 (3-95)||(8847508-8847600)
chr3 (3-111)||(52570728-52570835)
chr3 (1-72)||(44695725-44695796)
chr3 (3-81)||(37509086-37509164)
chr3 (3-81)||(20227436-20227514)
chr3 (159-220)||(37445169-37445230)
chr3 (3-76)||(45899600-45899673)
chr3 (5-110)||(41345921-41346026)
chr3 (11-75)||(25102385-25102449)
chr3 (57-111)||(20406661-20406715)
chr3 (3-41)||(49976197-49976235)
chr3 (3-64)||(34060822-34060883)
[»] chr6 (17 HSPs)
chr6 (3-107)||(7875237-7875341)
chr6 (3-106)||(26572133-26572236)
chr6 (3-109)||(7880483-7880589)
chr6 (7-105)||(16437642-16437740)
chr6 (3-108)||(10855381-10855485)
chr6 (3-108)||(12191442-12191546)
chr6 (3-85)||(5578245-5578327)
chr6 (15-84)||(32786041-32786110)
chr6 (3-82)||(7274270-7274349)
chr6 (3-58)||(6866913-6866968)
chr6 (1-94)||(8324158-8324251)
chr6 (3-76)||(31220383-31220456)
chr6 (3-81)||(12175535-12175612)
chr6 (44-108)||(19645945-19646009)
chr6 (70-108)||(8825035-8825073)
chr6 (7-108)||(6507449-6507550)
chr6 (8-105)||(12226392-12226489)
[»] chr5 (31 HSPs)
chr5 (1-107)||(39567852-39567958)
chr5 (3-108)||(35653311-35653416)
chr5 (1-109)||(8410089-8410197)
chr5 (12-110)||(16315597-16315695)
chr5 (1-108)||(5151437-5151544)
chr5 (3-110)||(34546724-34546831)
chr5 (3-108)||(12914123-12914228)
chr5 (3-112)||(25017347-25017456)
chr5 (3-102)||(4422020-4422119)
chr5 (3-114)||(27823203-27823312)
chr5 (3-84)||(13951292-13951373)
chr5 (3-86)||(4962572-4962655)
chr5 (3-109)||(3639131-3639236)
chr5 (5-75)||(28143181-28143251)
chr5 (3-52)||(1759821-1759870)
chr5 (1-82)||(39692984-39693065)
chr5 (1-65)||(43414118-43414182)
chr5 (3-105)||(35945197-35945299)
chr5 (3-64)||(338820-338881)
chr5 (3-83)||(25568348-25568428)
chr5 (3-81)||(12068230-12068307)
chr5 (12-61)||(10017684-10017733)
chr5 (15-75)||(4838262-4838322)
chr5 (8-82)||(39042096-39042170)
chr5 (7-92)||(39167560-39167645)
chr5 (3-35)||(1479192-1479224)
chr5 (3-51)||(37243852-37243900)
chr5 (3-55)||(39335474-39335526)
chr5 (74-109)||(104984-105019)
chr5 (10-55)||(16899635-16899680)
chr5 (2-75)||(19894799-19894872)
[»] chr7 (36 HSPs)
chr7 (3-108)||(29687424-29687529)
chr7 (1-110)||(1910190-1910299)
chr7 (3-108)||(7323009-7323114)
chr7 (5-112)||(8292689-8292796)
chr7 (3-108)||(5240388-5240493)
chr7 (3-86)||(8380411-8380494)
chr7 (3-85)||(29034658-29034740)
chr7 (3-108)||(8258694-8258799)
chr7 (4-75)||(24359765-24359836)
chr7 (3-112)||(27053549-27053666)
chr7 (3-87)||(41188842-41188926)
chr7 (3-75)||(5348028-5348097)
chr7 (3-81)||(22521561-22521639)
chr7 (3-87)||(42222190-42222274)
chr7 (3-114)||(36279067-36279172)
chr7 (3-64)||(40194818-40194879)
chr7 (3-64)||(43567562-43567623)
chr7 (3-108)||(3681643-3681747)
chr7 (26-99)||(29959024-29959097)
chr7 (3-64)||(40763241-40763302)
chr7 (1-86)||(46478609-46478694)
chr7 (1-80)||(30388714-30388793)
chr7 (1-66)||(30538534-30538596)
chr7 (3-53)||(31626097-31626147)
chr7 (1-75)||(40066971-40067043)
chr7 (3-109)||(49069502-49069608)
chr7 (5-110)||(46042695-46042799)
chr7 (1-56)||(22707049-22707104)
chr7 (1-64)||(43958137-43958200)
chr7 (70-108)||(16492144-16492182)
chr7 (10-108)||(16957614-16957711)
chr7 (11-65)||(42552535-42552589)
chr7 (7-107)||(10575819-10575919)
chr7 (1-75)||(44260556-44260630)
chr7 (8-81)||(34835839-34835912)
chr7 (3-32)||(48454878-48454907)
[»] chr8 (26 HSPs)
chr8 (1-108)||(4989884-4989988)
chr8 (5-108)||(6433492-6433595)
chr8 (3-82)||(10694781-10694860)
chr8 (4-111)||(26672735-26672842)
chr8 (5-110)||(3174402-3174511)
chr8 (3-83)||(8018733-8018814)
chr8 (3-75)||(19389366-19389438)
chr8 (3-75)||(21016113-21016185)
chr8 (4-75)||(14855441-14855512)
chr8 (3-74)||(34713977-34714048)
chr8 (3-83)||(37433239-37433318)
chr8 (3-62)||(6939152-6939211)
chr8 (1-92)||(33741528-33741619)
chr8 (1-75)||(45337985-45338059)
chr8 (3-64)||(26195429-26195490)
chr8 (3-59)||(25249397-25249453)
chr8 (3-67)||(18068951-18069015)
chr8 (3-57)||(21016233-21016287)
chr8 (1-108)||(11295518-11295625)
chr8 (3-85)||(5129512-5129600)
chr8 (33-112)||(44874281-44874356)
chr8 (8-112)||(38869948-38870052)
chr8 (16-75)||(5300204-5300263)
chr8 (69-108)||(27982417-27982456)
chr8 (69-108)||(28039719-28039758)
chr8 (44-110)||(24066897-24066963)
[»] scaffold0062 (3 HSPs)
scaffold0062 (1-84)||(16825-16908)
scaffold0062 (1-84)||(26993-27076)
scaffold0062 (1-84)||(37159-37242)
[»] scaffold0002 (1 HSPs)
scaffold0002 (3-75)||(392188-392260)
[»] scaffold0809 (1 HSPs)
scaffold0809 (6-65)||(4705-4764)
[»] scaffold0144 (1 HSPs)
scaffold0144 (8-111)||(39534-39635)
[»] scaffold0050 (1 HSPs)
scaffold0050 (1-75)||(37433-37506)


Alignment Details
Target: chr4 (Bit Score: 1139; Significance: 0; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 1139; E-Value: 0
Query Start/End: Original strand, 1 - 1228
Target Start/End: Complemental strand, 55669794 - 55668555
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatg----- 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||         
T  55669794 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaaccattgccctcagggcaatgccctc 55669695  T
Q  96 ---------gttagcaagacccttaagtttatagtgatcttattgctgaggtttgttgcagttgacagcactaaagagatgattggaacattcagccctc 186  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55669694 agggcaatggttagcaagacccttaagtttatagtgatcttattgctgaggtttgttgcagttgacagcactaaagagatgattggaacattcagccctc 55669595  T
Q  187 aagcagagccttacacgcatgaaatgccagaagagacaacaccatctggtttatttgccagagggacatactcagctagaactaaggtactactttcttt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55669594 aagcagagccttacacgcatgaaatgccagaagagacaacaccatctggtttatttgccagagggacatactcagctagaactaaggtactactttcttt 55669495  T
Q  287 tatctatagctataatgcttgcttgattcctgattcttatgatgtaatctgtactatataaaagtaatatggcaacaatgaatatgatgtccattgatgg 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55669494 tatctatagctataatgcttgcttgattcctgattcttatgatgtaatttgtactatataaaagtaatatggcaacaatgaatatgatgtccattgatgg 55669395  T
Q  387 tattgagctgtatagatgcataatattatgaaccttggttcttctacatacataatattatgaaatgccactagtaatattatttaaccttcttttctat 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55669394 tattgagctgtatagatgcataatattatgaaccttggttcttctacatacataatattatgaaatgccactagtaatattatttaaccttcttttctat 55669295  T
Q  487 tttccacacacacaaaaaatttccgattttcatttataaatccctcattttagcaatttttatgaacgaattaacaaatttttaaggcattaagctaaag 586  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55669294 tttccacacaca--aaaaatttccgattttcatttataaatccctcattttagcaatttttatgaacgaattaacaaatttttaaggcattaagctaaag 55669197  T
Q  587 agagatgctatatatcgagaaggaagtttctcgcgaatttacaaattgcttacatgttgttttgtaaagcgtttggtcaaactttcagcccttatttccg 686  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55669196 agagatgctatatatcgcgaaggaagtttctcgcgaatttacaaattgcttacatgttgttttgtaaagcgtttggtcaaactttcagcccttatttccg 55669097  T
Q  687 gaaatcatgggaggggtgaaggttaagttggaaattttttcaaatgtcttcacaaaattgcaattcactattagtagcatgtcgctaagctaaattgaga 786  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55669096 gaaatcatgggaggggtgaaggttaagttggaaattttttcaaatgtcttcacaaaattgcaattcactattagtagcatgtcgctaagctaaattgaga 55668997  T
Q  787 aaggaaaaaaggcatcaagctaaattgaatctgtcattaattttatcttgattttctagaagaaccaaagttttgggacatgaataaaaatttagaaaca 886  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  55668996 aaggaaaaaaggcatcaagctaaattgaatctgtcattaattttatcttgattttctagaagaaccaaagttttgggacatgaataaaaatttaaaaaca 55668897  T
Q  887 ccaaagattaggaatagatcagggagaacctctttggtgtgttaatataatttctttggctttttcnnnnnnntaatcagtttgaaatcaactattattt 986  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  55668896 ccaaagattaggaatagatcagggagtacctctttggtgtgttaatataatttctttggctttttcaaaaaaataatcagtttgaaatcaactattattt 55668797  T
Q  987 gaacatcataacactgacactatatgtgtgtatctctatctctctcatactatttatcctcgtcactttacacacaaaagtacatgacacatttgacctc 1086  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55668796 gaacatcataacactgacactatacgtgtgtatctctatctctctcatactatttatcctcgtcactttacacacaaaagtacatgacacatttgacctc 55668697  T
Q  1087 aaactgttgatgccaaaacataatttcattttaaaaataaattgagcacgagttaatgtctttctggcagttcgccaacgaatactgaatattttttctg 1186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55668696 aaactgttgatgccaaaacataatttcattttaaaaataaattgagcacgagttaatgtctttctggcagttcgccaacgaatactgaatattttttctg 55668597  T
Q  1187 tggatagccaatagatgaaggttctagtaataagtttgttga 1228  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  55668596 tggatagccaatagatgaaggttctagtaataagtttgttga 55668555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 47188721 - 47188827
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    ||||||||||||||| | |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||    
T  47188721 tgataaatttaacttctaaaaagtcaaaatgttgttgaaaccaatgcaaacatgctacttttggcttccttaaccattgccctgatggcaatggttagca 47188820  T
Q  103 agaccct 109  Q
    |||||||    
T  47188821 agaccct 47188827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 45688796 - 45688687
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||  |||||||| |  |||||||||||||    
T  45688796 tgataaatttaactttttaaaagtcaaaatgttgttgaaactaatgcaaacatgctacttttggcttccttaactattgccctgaatgcaatggttagca 45688697  T
Q  103 agacccttaa 112  Q
    ||||||||||    
T  45688696 agacccttaa 45688687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 34316783 - 34316888
Alignment:
Q  7 aaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaagac 106  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| ||||| ||  |||||||||| |||||||||    
T  34316783 aaatttaactttttaaaagtcaaaatattgttgaaaccaatgcaaacatgctacttttggcttccttaaccattgtcccgagggcaatggctagcaagac 34316882  T
Q  107 ccttaa 112  Q
    ||||||    
T  34316883 ccttaa 34316888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 50514669 - 50514774
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||| |||||||| ||||| | || |||||||||||||||    
T  50514669 tgataaatttaactttttaaaagttaaaatgttgttgaaaccaatgcaaacatgctacttttggtttccttaaccattgacatcggggcaatggttagca 50514768  T
Q  103 agaccc 108  Q
    ||||||    
T  50514769 agaccc 50514774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 23765631 - 23765527
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||| ||||||||||  |||| ||| ||||||||||||||||    
T  23765631 tgataaatttaactttttaaaaatcaaaatgttgttgaaaccaatgcaaacatgctacttttagcttccttaacaattgtcctgagggcaatggttagca 23765532  T
Q  103 agacc 107  Q
    |||||    
T  23765531 agacc 23765527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 2362669 - 2362573
Alignment:
Q  16 tttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaagacccttaa 112  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||| ||||||||| | ||||||||||||| ||||||||||    
T  2362669 tttttaaaagtcaaaatgttgttaaaaccaatgcaaacatactacttttgacttccttaaccattgccctgaaggcaatggttagcgagacccttaa 2362573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 35808450 - 35808530
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattg 81  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||    
T  35808450 aatgataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaacatgctacttttggcttccttaaccattg 35808530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 41956267 - 41956375
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttag 100  Q
    |||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||| ||||||||| |||||| || ||||||||| |||     
T  41956267 aatgataaatttaactttttaaaagtcaaaatgttgttgaagccaatgcaaacatgctacttttgccttccttaaccattgctctgagggcaatgattaa 41956366  T
Q  101 caagaccct 109  Q
    |||| ||||    
T  41956367 caaggccct 41956375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 51266977 - 51266895
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccct 85  Q
    |||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||||||    
T  51266977 tgataaatttaactttttaaaagtcaaaatgttgttgaaatcaatacaaacatgctacttttgacttccttaatcattgccct 51266895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 20811316 - 20811239
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcatt 80  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  20811316 tgataaatttaactttttaaaagtcaaaatgttgttaaaatcaatgcaaacatgctacttttggcttctttaaccatt 20811239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 30475478 - 30475374
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    ||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||  ||||||||||||||||||  ||||| || ||||||||||||||||    
T  30475478 tgataaatttaactttttaaatgtcaaaatattgttgaaaccaatgcaaacatattacttttggcttccttaactattgctctgagggcaatggttagca 30475379  T
Q  103 agacc 107  Q
    |||||    
T  30475378 agacc 30475374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 19328984 - 19329086
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||||| |||||     ||||||||| ||||||    
T  19328984 tgataaatttaactttttaaaagtcaaaatattgttgaaaccaatgcaaacatgctacttttgccttccttaaccattg-----agggcaatgattagca 19329078  T
Q  103 agaccctt 110  Q
    ||||||||    
T  19329079 agaccctt 19329086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 26040416 - 26040523
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||| ||||||||||||||||||||||| ||||| ||  ||||||||| |||||||||||||||||||||| || ||| || ||| ||||||||||||    
T  26040416 tgataagtttaactttttaaaagtcaaaatattgttgaagccaatgcaaatatgctacttttggcttccttaaccactgctctgaggacaatggttagca 26040515  T
Q  103 agaccctt 110  Q
    ||||||||    
T  26040516 agaccctt 26040523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 54339168 - 54339061
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttag 100  Q
    |||||||||||||| ||||||||||||||||| || || ||| ||||| ||| |||||||||||| ||||||||| |||||| || ||||||||||||||    
T  54339168 aatgataaatttaattttttaaaagtcaaaatatttttgaaaccaatgtaaatatgctacttttgacttccttaaccattgctctgagggcaatggttag 54339069  T
Q  101 caagaccc 108  Q
    ||||||||    
T  54339068 caagaccc 54339061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 27839360 - 27839443
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccc 84  Q
    |||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| ||||| | ||||||||||||||||    
T  27839360 aatgataaatttaagtttttaaaagtcaaaatgttattaaaaccaatgcaaacatgctatttttgacctccttaatcattgccc 27839443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 34016678 - 34016572
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||| ||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||| |||| |||||||||||  || | ||||||||||||||    
T  34016678 tgatgaatttaactttttaaaagtcaaaatgttgttgaaatcaatgcaaacattctatttttagctttcttaatcattg-tcttaaggcaatggttagca 34016580  T
Q  103 agaccctt 110  Q
    ||||||||    
T  34016579 agaccctt 34016572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 31754991 - 31754914
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcatt 80  Q
    |||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||||| ||||    
T  31754991 tgataaatttaactttttaaaagtcaaaatattgttgaaaccaatgcaaacatgctacttttgacttccttaaccatt 31754914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 10100171 - 10100247
Alignment:
Q  5 ataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattg 81  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||| ||||| |||||    
T  10100171 ataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaacatgttacttttggctttcttaaccattg 10100247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 31168187 - 31168081
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagg-gcaatggttagc 101  Q
    |||||||||||| ||||| ||||||||||||||||| ||| ||||| |||||| |||||||||||||| |||| ||||| |||| || ||||||||||||    
T  31168187 tgataaatttaatttttttaaagtcaaaatgttgttgaaaccaatgtaaacattctacttttggcttctttaaccattg-cctcgggagcaatggttagc 31168089  T
Q  102 aagaccct 109  Q
    ||||||||    
T  31168088 aagaccct 31168081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 33951753 - 33951662
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaat 94  Q
    |||||||||||||||||||||| | ||||||||||| ||| |||| |||||||| || ||||||||||||||| ||||||||| ||||||||    
T  33951753 tgataaatttaactttttaaaaattaaaatgttgttgaaaccaatacaaacatgttaattttggcttccttaaccattgccctgagggcaat 33951662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 9693528 - 9693622
Alignment:
Q  4 gataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggtt 98  Q
    |||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||| ||||| ||||||||| |||||| || ||| ||||||||    
T  9693528 gataaatttaactttttaaaagtcgaaatattgttgaaaccaatgcaaacatgctatttttgacttccttaaccattgctctgaggacaatggtt 9693622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 45088120 - 45088020
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||| ||||| |||||||||||||||   ||| |||||||||||| |||||||||| |||||||| ||||||||    ||||||||||||||    
T  45088120 tgataaatttaattttttgaaagtcaaaatgttg---aaatcaatgcaaacatactacttttggtttccttaaccattgccc----ggcaatggttagca 45088028  T
Q  103 agaccctt 110  Q
    ||||||||    
T  45088027 agaccctt 45088020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 26831842 - 26831946
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    ||||||||||| |||||||||| | ||||||||||| ||| |||||||||||||||||||||| |||| ||||  ||||||   |||| |||||||||||    
T  26831842 tgataaatttatctttttaaaaattaaaatgttgttgaaa-caatgcaaacatgctacttttgacttctttaacgattgccacgagggtaatggttagca 26831940  T
Q  103 agaccc 108  Q
    ||||||    
T  26831941 agaccc 26831946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 20456617 - 20456522
Alignment:
Q  8 aatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaa 103  Q
    ||||||| |||||||| || ||||| ||||| ||  ||||||||||||||||||||||  |||||||||||||||||| || ||| ||||||||||    
T  20456617 aatttaaatttttaaatgttaaaatattgttgaattcaatgcaaacatgctacttttgatttccttaatcattgccctaagagcactggttagcaa 20456522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 52341656 - 52341582
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    |||||| ||||||||||||||||||||||||||||||| ||  |||||||||||| ||| |||||| ||||||||    
T  52341656 aatgatgaatttaactttttaaaagtcaaaatgttgttgaatccaatgcaaacatactaattttggtttccttaa 52341582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 53567011 - 53567081
Alignment:
Q  5 ataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    |||||||||||||||||||||| ||||||||||| |||   |||||||||||||||||||| |||||||||    
T  53567011 ataaatttaactttttaaaagttaaaatgttgttgaaactcatgcaaacatgctacttttgacttccttaa 53567081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 32131195 - 32131134
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctactttt 64  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||||||    
T  32131195 tgataaatttaactttttaaaagtcaagatgttgttgaaaccaatgcaaacatgttactttt 32131134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 40436132 - 40436056
Alignment:
Q  5 ataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattg 81  Q
    |||||||||||||||||||  ||||||| ||||| ||| ||| ||||||||||||||||||| || ||||| |||||    
T  40436132 ataaatttaactttttaaatatcaaaatattgttgaaaccaaagcaaacatgctacttttggttttcttaaccattg 40436056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 15986314 - 15986237
Alignment:
Q  8 aatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccct 85  Q
    ||||||| ||||||||||||| ||| ||||| ||  |||||||||||| |||||||| | |||||||| |||||||||    
T  15986314 aatttaaatttttaaaagtcagaatattgttgaattcaatgcaaacattctacttttagtttccttaaccattgccct 15986237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 3769866 - 3769804
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttg 65  Q
    |||||||||| ||||||||||||| ||||| ||||||||  |||||||||| | |||||||||    
T  3769866 tgataaatttgactttttaaaagttaaaatattgttaaattcaatgcaaacctactacttttg 3769804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 35675246 - 35675308
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttg 65  Q
    |||| ||||||||||||||||||| ||||| ||||| ||  |||||||||||| |||||||||    
T  35675246 tgatgaatttaactttttaaaagttaaaatattgttgaattcaatgcaaacatactacttttg 35675308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 30617997 - 30617920
Alignment:
Q  8 aatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccct 85  Q
    |||||||||||||||||||  |||| ||||| ||  |||||||| | | |||||||||| ||||||||| | ||||||    
T  30617997 aatttaactttttaaaagttcaaatattgttgaatccaatgcaatcctactacttttggtttccttaataagtgccct 30617920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 50620715 - 50620756
Alignment:
Q  68 ttccttaatcattgccctcagggcaatggttagcaagaccct 109  Q
    |||||||| ||||||||| |||||| ||||||||||||||||    
T  50620715 ttccttaaccattgccctaagggcattggttagcaagaccct 50620756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 4e-41; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 27209774 - 27209880
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||||||||||||||| ||||||||||| ||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  27209774 tgataaatttaactttttaaaagttaaaatgttgttgaaaccaatgcaaacatcctacttttggcttccttaaccattgccctcagggcaatggttagca 27209873  T
Q  103 agaccct 109  Q
    |||||||    
T  27209874 agaccct 27209880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 22346290 - 22346396
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||| ||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  22346290 tgataaatttaattttttaaaagtcaaaatattgttgaaaccaatgcaaacatgctacttttggcttccttaaccattgtcctcaaggcaatggttagca 22346389  T
Q  103 agaccct 109  Q
    |||||||    
T  22346390 agaccct 22346396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 6170602 - 6170710
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttag 100  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||| ||||||||| ||||||| | |||||||||| |||    
T  6170602 aatgataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaacatgttacttttgacttccttaaccattgccttaagggcaatggatag 6170701  T
Q  101 caagaccct 109  Q
     ||||||||    
T  6170702 taagaccct 6170710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 7190528 - 7190634
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||||||||||||||| |||||| |||| |||  |||||||||||||||||||| |||||||||| ||||| ||| ||||||||||||||||    
T  7190528 tgataaatttaactttttaaaagttaaaatggtgttgaaactaatgcaaacatgctacttttagcttccttaaccattgtcctaagggcaatggttagca 7190627  T
Q  103 agaccct 109  Q
    |||||||    
T  7190628 agaccct 7190634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 4940793 - 4940900
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| |||||| ||||||||  |||||||| ||| || |||||||||    
T  4940793 tgataaatttaactttttaaaagtcaaaatattgttaaaaccaatacaaacatgctatttttggtttccttaactattgccctgaggacagtggttagca 4940892  T
Q  103 agaccctt 110  Q
    ||||||||    
T  4940893 agaccctt 4940900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 49508786 - 49508893
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||||||||||||||||||||| ||||  ||| ||||||||||||||||||||||||||| |||| ||||| | | |||||||| |||||||    
T  49508786 tgataaatttaactttttaaaagtcaaaatattgtcgaaaccaatgcaaacatgctacttttggcttctttaaccattgtcttgagggcaatagttagca 49508885  T
Q  103 agaccctt 110  Q
    ||||||||    
T  49508886 agaccctt 49508893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 33930019 - 33929947
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  33930019 tgataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaacatgctacttttggcttccttaa 33929947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 43433828 - 43433724
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||||||||||||| | ||||||||||| ||| |||| ||||||| ||||||||||||||||||| |||| |||||| |||||| |||||||    
T  43433828 tgataaatttaactttttaaaaattaaaatgttgttgaaaccaatacaaacatactacttttggcttccttaaccattaccctcaaggcaatagttagca 43433729  T
Q  103 agacc 107  Q
    |||||    
T  43433728 agacc 43433724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 11386034 - 11385953
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccc 84  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || ||||| ||||||||    
T  11386034 tgataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaacatgctacttttggttttcttaaccattgccc 11385953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 34874620 - 34874548
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    |||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  34874620 tgataaatttaattttttaaaagtcaaaatgttgttgaaaccaatgcaaacatgctacttttggcttccttaa 34874548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 47895387 - 47895283
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    ||||||||||||||||||||| |||||||| ||||| |||  |||||||||||| |||||||||||||||||| |||||| || ||| ||||||||| ||    
T  47895387 tgataaatttaactttttaaatgtcaaaatattgttgaaactaatgcaaacatgttacttttggcttccttaaccattgctctgaggacaatggttaaca 47895288  T
Q  103 agacc 107  Q
    |||||    
T  47895287 agacc 47895283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 41147529 - 41147612
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccc 84  Q
    |||||| ||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||||| ||||||||    
T  41147529 aatgattaatttaactttttaaaagtcaaaatattgttgaaaccaatgcaaacatgctacttttgacttccttaaccattgccc 41147612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 47655424 - 47655495
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttcctta 74  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||    
T  47655424 tgataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaacatgctacttttgccttcctta 47655495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 24140826 - 24140744
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccct 85  Q
    ||||||| |||||||||| ||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| |||||||||    
T  24140826 tgataaacttaacttttttaaagtcaaaatgttgttgaaaccaatgcaaacatgctatttttggcttccttaaccattgccct 24140744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 50154528 - 50154444
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccct 85  Q
    ||||||||||||||| |||||||||| ||||||||||| ||| ||||||||||||| |||||||||||||||||| |||| ||||    
T  50154528 aatgataaatttaaccttttaaaagttaaaatgttgttgaaaccaatgcaaacatgttacttttggcttccttaaccattaccct 50154444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 42607375 - 42607438
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctactttt 64  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  42607375 aatgataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaacatgctactttt 42607438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 45721805 - 45721701
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||||||||||||| ||||||||||   |||| ||||||||||||||||||||||  |||||||| ||||||| | |||  |||||| ||||    
T  45721805 tgataaatttaactttttaaaaatcaaaatgtt---aaaatcaatgcaaacatgctacttttgatttccttaaccattgccataaggtaaatggtcagca 45721709  T
Q  103 agaccctt 110  Q
    ||| ||||    
T  45721708 agaacctt 45721701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 28277535 - 28277607
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    |||||||||||||||||||||| | ||||||||||| ||||||||||||||||| ||||||||  ||||||||    
T  28277535 tgataaatttaactttttaaaaattaaaatgttgttgaaaacaatgcaaacatgttacttttgatttccttaa 28277607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 49901979 - 49901907
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    ||||||||||||||||||||| || |||| |||||| ||| ||||||||||||| ||||||||||||||||||    
T  49901979 tgataaatttaactttttaaacgttaaaacgttgttgaaaccaatgcaaacatgatacttttggcttccttaa 49901907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 932212 - 932287
Alignment:
Q  5 ataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcatt 80  Q
    |||||||||| ||||||||||||||||||||||| |||  ||||||||||||||||||||  ||||||||| ||||    
T  932212 ataaatttaattttttaaaagtcaaaatgttgttgaaactaatgcaaacatgctacttttaccttccttaaccatt 932287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 11385865 - 11385946
Alignment:
Q  5 ataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctc 86  Q
    |||||||||||||||||||||||||||||||||| ||| ||||| |   ||||||||| |||| ||||||| ||||||||||    
T  11385865 ataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgtaggaatgctacttatggcatccttaaccattgccctc 11385946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 50295486 - 50295555
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgc-aaacatgctacttttggcttcc 71  Q
    |||||||||||||||||||||||||||||| ||||| ||| |||||| |||||||||||||||| |||||    
T  50295486 tgataaatttaactttttaaaagtcaaaatattgttgaaatcaatgcaaaacatgctacttttgacttcc 50295555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 14331885 - 14331785
Alignment:
Q  8 aatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaagacc 107  Q
    ||||||||||||||||||||||||  ||||| ||  ||||| ||| || ||| |||||| |||||||| ||||||||| ||||||  |||||||||||||    
T  14331885 aatttaactttttaaaagtcaaaacattgttgaattcaatgtaaatatactatttttggtttccttaaccattgccctgagggcaccggttagcaagacc 14331786  T
Q  108 c 108  Q
    |    
T  14331785 c 14331785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 44359730 - 44359830
Alignment:
Q  8 aatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaagacc 107  Q
    ||||||||||||||||||||||||  ||||| ||  ||||| ||| || ||| |||||| |||||||| ||||||||| |||||| | ||||||||||||    
T  44359730 aatttaactttttaaaagtcaaaacattgttgaattcaatgtaaatatactatttttggtttccttaaccattgccctgagggcactagttagcaagacc 44359829  T
Q  108 c 108  Q
    |    
T  44359830 c 44359830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 29966878 - 29966803
Alignment:
Q  1 aatgataaatttaacttttta-aaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    |||||||||||||| |||||  ||||||||||| ||||| ||| |||||||||||||||||||||| |||||||||    
T  29966878 aatgataaatttaattttttttaaagtcaaaatattgttgaaaccaatgcaaacatgctacttttgacttccttaa 29966803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 31975537 - 31975437
Alignment:
Q  6 taaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaaga 105  Q
    ||||||||||||||||||| ||||||| |||||||||  |||||||||||| || |||| |||| ||||| ||||||| |    |||||||||||||| |    
T  31975537 taaatttaactttttaaaaatcaaaatattgttaaaactaatgcaaacatgttatttttagctttcttaaccattgccat----gcaatggttagcaaaa 31975442  T
Q  106 ccctt 110  Q
    |||||    
T  31975441 ccctt 31975437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 26469633 - 26469707
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    |||||||||||||||||||||||||||||||| || || ||| ||||| |||||| ||||||||  |||||||||    
T  26469633 aatgataaatttaactttttaaaagtcaaaatattattgaaaccaatgaaaacatactacttttaacttccttaa 26469707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 28850963 - 28851076
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatca-----ttgccctcagggcaatggt 97  Q
    |||||||||||||||||||||||||||||  ||||| ||| ||||||||| |||||||||||| ||| |||||  |     ||| | | |||||||||||    
T  28850963 tgataaatttaactttttaaaagtcaaaa-attgttgaaaccaatgcaaatatgctacttttgactttcttaacaattgtcttgtcttaagggcaatggt 28851061  T
Q  98 tagcaagacccttaa 112  Q
    |||||||||||||||    
T  28851062 tagcaagacccttaa 28851076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 43168187 - 43168089
Alignment:
Q  10 tttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaagaccc 108  Q
    ||||||||||||||||||||||  ||||| ||  ||||| ||| || |||||||||  |||||||| |||| |||| |||||| |||||||||||||||    
T  43168187 tttaactttttaaaagtcaaaacattgttgaattcaatgtaaatatactacttttgatttccttaaccatttccctgagggcactggttagcaagaccc 43168089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 52396496 - 52396414
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccct 85  Q
    |||||||||||||||||||||||||||||| || || |||  ||||||||||||||| ||||   |||||||| |||||||||    
T  52396496 tgataaatttaactttttaaaagtcaaaatattattgaaacaaatgcaaacatgctatttttaatttccttaaccattgccct 52396414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 2125760 - 2125869
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||||||||||||||||||||||||| | |||  ||| ||| |||| |||||||| |||| |||| ||||| | | | | ||||| ||| ||    
T  2125760 tgataaatttaactttttaaaagtcaaaatgttgatgaaacaaatacaaccatgttacttttgacttctttaaccattgtcatgaagacaatgattacca 2125859  T
Q  103 agacccttaa 112  Q
    ||||||||||    
T  2125860 agacccttaa 2125869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 44286927 - 44286864
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctactttt 64  Q
    |||||||||||||||||||||||| | ||||| || |||||| ||||||||||||| |||||||    
T  44286927 aatgataaatttaactttttaaaaattaaaatattattaaaaccaatgcaaacatgttactttt 44286864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 8244147 - 8244044
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttag 100  Q
    |||||||||||||||||||| |||      ||||| || ||| ||||| ||||||| || ||||||||||||||| |||||||||  | ||||||||| |    
T  8244147 aatgataaatttaactttttcaaac-----atgtttttgaaaccaatggaaacatgttatttttggcttccttaaccattgccctgggtgcaatggtttg 8244053  T
Q  101 caagaccct 109  Q
    |||||||||    
T  8244052 caagaccct 8244044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 40845304 - 40845228
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatg----caaacatgctacttttggcttccttaa 75  Q
    |||||||||||||||||||||| ||||||| ||||| ||| ||| |    ||||||||||||||||| |||||||||    
T  40845304 tgataaatttaactttttaaaaatcaaaatattgttgaaaccaaagcaaacaaacatgctacttttgacttccttaa 40845228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 32213942 - 32213988
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgc 49  Q
    |||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  32213942 tgataaatttaattttttaaaagtcaaaatgttgttgaaaccaatgc 32213988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 75
Target Start/End: Original strand, 9055907 - 9055937
Alignment:
Q  45 aatgcaaacatgctacttttggcttccttaa 75  Q
    |||||||||||||||||||||||||||||||    
T  9055907 aatgcaaacatgctacttttggcttccttaa 9055937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 48938678 - 48938584
Alignment:
Q  14 actttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaagaccc 108  Q
    ||||||||||||||||||  ||||| ||   |||| ||| || |||||||||| |||||||| ||||| ||| | |||| ||||||| |||||||    
T  48938678 actttttaaaagtcaaaacattgttgaatttaatgtaaatatactacttttggtttccttaaccattgtcctgatggcactggttagtaagaccc 48938584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 4656069 - 4656020
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaa 52  Q
    |||||||||||||||||||||| | ||||||||||| |||  ||||||||    
T  4656069 tgataaatttaactttttaaaaattaaaatgttgttgaaactaatgcaaa 4656020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 30222674 - 30222613
Alignment:
Q  3 tgataaatttaacttttt-aaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttt 63  Q
    |||||||||||| ||||| |||||| ||||| ||||| ||| ||||||||| ||||||||||    
T  30222674 tgataaatttaattttttaaaaagttaaaatattgttgaaaccaatgcaaatatgctacttt 30222613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 46296240 - 46296273
Alignment:
Q  5 ataaatttaactttttaaaagtcaaaatgttgtt 38  Q
    |||||||||||||||||||||||||||| |||||    
T  46296240 ataaatttaactttttaaaagtcaaaatattgtt 46296273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 2e-40; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 6999257 - 6999148
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttag 100  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  6999257 aatgataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaacatgctacttttggcttccttaaccattgccctgaggacaatggttag 6999158  T
Q  101 caagaccctt 110  Q
    ||| ||||||    
T  6999157 caaaaccctt 6999148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 39085848 - 39085952
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||| ||||||||| |||||| || ||| ||||||||||||    
T  39085848 tgataaatttaactttttaaaagtcaaaatgttgttgaaatcaatgcaaacatgctgcttttgacttccttaaccattgctctgaggacaatggttagca 39085947  T
Q  103 agacc 107  Q
    |||||    
T  39085948 agacc 39085952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 2966593 - 2966486
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||||| |||||||||| ||||||||| ||| ||||| ||||||    
T  2966593 tgataaatttaattttttaaaagtcaaaatgttgttgaaaccaatgcaaatatgctacttttagcttccttaaccattgccctgaggacaatgattagca 2966494  T
Q  103 agaccctt 110  Q
    ||||||||    
T  2966493 agaccctt 2966486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 862642 - 862559
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctc 86  Q
    |||||||||||||||||||| ||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  862642 tgataaatttaactttttaagagtcaaaatcttgttgaaaccaatgcaaacatgctacttttggcttccttaatcattgccctc 862559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 137 - 275
Target Start/End: Complemental strand, 9214721 - 9214583
Alignment:
Q  137 gtttgttgcagttgacagcactaaagagatgattggaacattcagccctcaagcagagccttacacgcatgaaatgccagaagagacaacaccatctggt 236  Q
    ||||||| ||||||| |||| |||||| ||||||||||| ||||| |||||| | ||| ||||||| ||||| ||||| ||||||||||||||||||||     
T  9214721 gtttgttacagttgatagcagtaaagaaatgattggaaccttcagtcctcaaactgagacttacactcatgagatgcctgaagagacaacaccatctggg 9214622  T
Q  237 ttatttgccagagggacatactcagctagaactaaggta 275  Q
     | ||||| |||||| |||| |||||||||| |||||||    
T  9214621 atgtttgctagaggggcatattcagctagaagtaaggta 9214583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 16361619 - 16361537
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccct 85  Q
    |||||||||||||||| ||||||||||||||||||  ||| ||||||||||||| ||||||||||||||||||||||||||||    
T  16361619 tgataaatttaactttataaaagtcaaaatgttgtcgaaaccaatgcaaacatgttacttttggcttccttaatcattgccct 16361537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 23685708 - 23685810
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    ||||||||||||||||||||||||||||||||| || ||| ||||||||||||| |||||||||||||||||| ||||||| || |  ||||||||| ||    
T  23685708 tgataaatttaactttttaaaagtcaaaatgttattgaaatcaatgcaaacatgttacttttggcttccttaaacattgccatcggaacaatggttatca 23685807  T
Q  103 aga 105  Q
    |||    
T  23685808 aga 23685810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 27495176 - 27495083
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatgg 96  Q
    ||||||||||||| |||||||| ||||||||||||| ||| |||||||||||| ||||||||| ||||||||| ||||||||||||| ||||||    
T  27495176 tgataaatttaacattttaaaaatcaaaatgttgttgaaaccaatgcaaacatactacttttgacttccttaaccattgccctcaggacaatgg 27495083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 17056113 - 17056196
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctc 86  Q
    ||||||||||||||||||||||| |||||||||||| ||| ||||||||| |||||| ||||||||||||||| ||||||||||    
T  17056113 tgataaatttaactttttaaaagacaaaatgttgttgaaaccaatgcaaatatgctatttttggcttccttaaccattgccctc 17056196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 17068560 - 17068643
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctc 86  Q
    ||||||||||||||||||||||| |||||||||||| ||| ||||||||| |||||| ||||||||||||||| ||||||||||    
T  17068560 tgataaatttaactttttaaaagacaaaatgttgttgaaaccaatgcaaatatgctatttttggcttccttaaccattgccctc 17068643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 41436531 - 41436448
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctc 86  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||| |||| ||||||||||    
T  41436531 tgataaacttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaacatgctacttttgacttcattaaccattgccctc 41436448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 1321219 - 1321117
Alignment:
Q  5 ataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa-tcattgccctcagggcaatggttagcaa 103  Q
    |||||||||||| ||||||| ||||||||||||| ||| ||||| ||||||||||  ||||||||||||||  ||||||||| |||||||||||||||||    
T  1321219 ataaatttaactctttaaaaatcaaaatgttgttgaaatcaatgtaaacatgctaactttggcttccttaacccattgccctgagggcaatggttagcaa 1321120  T
Q  104 gac 106  Q
    |||    
T  1321119 gac 1321117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 39401595 - 39401693
Alignment:
Q  8 aatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaagacc 107  Q
    ||||||||||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||||||| ||||||||       ||||||||||||||||    
T  39401595 aatttaactttttaaaagtcaaaattttgttgaaaccaatacaaacatgctacttttggcttccttaaccattgccc------gaatggttagcaagacc 39401688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 9201551 - 9201653
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    ||||||||||||||||||||||||||||||||||||  || |||| |||||||| |||||||| |||| ||||  |||||||| |||||||| |||||||    
T  9201551 tgataaatttaactttttaaaagtcaaaatgttgtt-gaaccaatacaaacatgttacttttgacttctttaactattgccctgagggcaatagttagca 9201649  T
Q  103 agac 106  Q
    ||||    
T  9201650 agac 9201653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 17074543 - 17074626
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctc 86  Q
    ||||||||||||||||||||||| |||||||||||| |||  |||||||| |||||| ||||||||||||||| ||||||||||    
T  17074543 tgataaatttaactttttaaaagacaaaatgttgttgaaactaatgcaaatatgctatttttggcttccttaaccattgccctc 17074626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 17095122 - 17095204
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccct 85  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| |||||  |||||||| |||||||||    
T  17095122 tgataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaatatgctatttttgcattccttaaccattgccct 17095204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 11445379 - 11445454
Alignment:
Q  7 aaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgc 82  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||||||||| ||||||||| |||||||| ||||||    
T  11445379 aaatttaactttttaaatgtcaaaatgttgttgaaaccaatgcaaacatgttacttttggtttccttaaccattgc 11445454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 17118427 - 17118517
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggca 92  Q
    |||||||||||||||||||||||| ||||| ||||||| ||| ||||||||| ||| || ||||||||||||||| ||||| ||||| ||||    
T  17118427 aatgataaatttaactttttaaaactcaaa-tgttgttgaaaccaatgcaaatatgttatttttggcttccttaaccattgtcctcaaggca 17118517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17603866 - 17603808
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgcta 59  Q
    ||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||    
T  17603866 aatgataaatttaactttttaaaagtcaaaatgttattgaaatcaatgcaaacatgcta 17603808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 464850 - 464770
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattg 81  Q
    |||||||| ||||||||||||||||| |||||||| || ||| |||| |||||||| |||||||  |||||||||||||||    
T  464850 aatgataattttaactttttaaaagttaaaatgttattgaaatcaatacaaacatgttacttttaacttccttaatcattg 464770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 765206 - 765258
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacat 55  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  765206 tgataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaacat 765258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 44299737 - 44299815
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattg 81  Q
    ||||||||||||| |||||||||||||||| ||||| ||| ||||| || ||| ||| ||||||||||||||| |||||    
T  44299737 tgataaatttaacattttaaaagtcaaaatattgttgaaaccaatgtaagcatactatttttggcttccttaaccattg 44299815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 35445346 - 35445419
Alignment:
Q  3 tgataaatttaacttttt-aaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    |||||||||||||||||| |||||||||||| ||||| ||| |||| ||||||||||||||||| ||| |||||    
T  35445346 tgataaatttaactttttcaaaagtcaaaatattgttgaaaccaatacaaacatgctacttttgacttgcttaa 35445419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 15004980 - 15004908
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    |||||||||||||||||||||| | ||||||||||| ||| |||| |||||||| |||||||| |||| ||||    
T  15004980 tgataaatttaactttttaaaaattaaaatgttgttgaaaccaatacaaacatgatacttttgacttctttaa 15004908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 44173174 - 44173070
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttag 100  Q
    |||||||||||||| ||||||||| | ||||||||||| ||| |||| |||||||  || |||||||||| |||| | ||| ||| || | |||||||||    
T  44173174 aatgataaatttaattttttaaaaattaaaatgttgttgaaaccaatacaaacatatta-ttttggcttctttaaccgttgtcctgagagtaatggttag 44173076  T
Q  101 caagac 106  Q
    ||||||    
T  44173075 caagac 44173070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 33726431 - 33726355
Alignment:
Q  5 ataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattg 81  Q
    |||||||||||||| ||||||| ||||| ||||| ||| |||| ||||||||||| |||||  |||||||| |||||    
T  33726431 ataaatttaactttctaaaagttaaaatattgttgaaatcaatacaaacatgctatttttgatttccttaaccattg 33726355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 33864406 - 33864303
Alignment:
Q  5 ataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaag 104  Q
    ||||||||||| |||||||||||||||| ||||| ||| ||||||||| ||| ||| || | ||||||||| ||||| |   ||| |||||||||||||     
T  33864406 ataaatttaacattttaaaagtcaaaatattgttgaaaccaatgcaaatatgttac-ttcgacttccttaaccattgtcacgaggacaatggttagcaaa 33864308  T
Q  105 accct 109  Q
    |||||    
T  33864307 accct 33864303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 11659310 - 11659207
Alignment:
Q  8 aatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaagacc 107  Q
    ||||||||||||||||| | ||||| ||||| ||  ||||| ||| || || ||||||| |||||||| ||||||||| ||   | ||||||||||||||    
T  11659310 aatttaactttttaaaaattaaaatattgttgaattcaatgtaaatatactgcttttggtttccttaaccattgccctaagaatactggttagcaagacc 11659211  T
Q  108 ctta 111  Q
    ||||    
T  11659210 ctta 11659207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 13997958 - 13998016
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgcta 59  Q
    |||||||||||||||||||||||| | ||||| ||||| ||| |||| |||||||||||    
T  13997958 aatgataaatttaactttttaaaaattaaaatattgttgaaatcaatacaaacatgcta 13998016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 6084692 - 6084650
Alignment:
Q  70 ccttaatcattgccctcagggcaatggttagcaagacccttaa 112  Q
    |||||||||||| ||| ||||||||||||||| ||||||||||    
T  6084692 ccttaatcattgtcctgagggcaatggttagcgagacccttaa 6084650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2239637 - 2239572
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttgg 66  Q
    |||||| ||||||||||||||||||| ||||| ||||| ||  |||| |||| || ||||||||||    
T  2239637 aatgatgaatttaactttttaaaagttaaaatattgttgaatccaatacaaatatactacttttgg 2239572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 3e-39; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 44570442 - 44570549
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||    
T  44570442 tgataactttaactttttaaaagtcaaaatgttgttgaaatcaatgcaaacatgctacttttggcttccttaaccattgcccagagggcaatggttagca 44570541  T
Q  103 agaccctt 110  Q
    ||||||||    
T  44570542 agaccctt 44570549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 7e-37
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 10854910 - 10854803
Alignment:
Q  5 ataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaag 104  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||    
T  10854910 ataaatttaactttttaaaagttaaaatgttgttgaaaccaatgcaaacatgctacttttggcttccttaatcattgtcacgagggcaatggttagcaag 10854811  T
Q  105 acccttaa 112  Q
    ||||||||    
T  10854810 acccttaa 10854803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 7e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 12051093 - 12050986
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttag 100  Q
    |||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||||    
T  12051093 aatgataaatttaactttttaaaaattaaaatgttgttgaaaacaatgcaaacatgctacttttggcttccttaaccattgccctgagggtaatagttag 12050994  T
Q  101 caagaccc 108  Q
    ||||||||    
T  12050993 caagaccc 12050986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 46317541 - 46317433
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttag 100  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||| |||||  || ||||||||||||||    
T  46317541 aatgataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaacatgttacttttggcttccttaaccattg-tctgagggcaatggttag 46317443  T
Q  101 caagaccctt 110  Q
    ||| ||||||    
T  46317442 caaaaccctt 46317433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 36730209 - 36730293
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctca 87  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||    
T  36730209 tgataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaacatgctacttttggcttccttaaccattgccctca 36730293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 51817368 - 51817476
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||||||||||||||||||||| ||||| |||  ||| ||||||||||||||||||||||||||| |||||||||||||| |||||||| ||    
T  51817368 tgataaatttaactttttaaaagtcaaaatattgttgaaactaatacaaacatgctacttttggcttccttaaccattgccctcagggtaatggttaaca 51817467  T
Q  103 agaccctta 111  Q
    | |||||||    
T  51817468 aaaccctta 51817476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 8715557 - 8715667
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggca--atggttag 100  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| |||| ||| ||| |||  ||||||||    
T  8715557 tgataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaacatgctacttttagcttccttaaccattacccacagagcaatatggttag 8715656  T
Q  101 caagaccctta 111  Q
    |||||||||||    
T  8715657 caagaccctta 8715667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 9067444 - 9067554
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggca--atggttag 100  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| |||| ||| ||| |||  ||||||||    
T  9067444 tgataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaacatgctacttttagcttccttaaccattacccacagagcaatatggttag 9067543  T
Q  101 caagaccctta 111  Q
    |||||||||||    
T  9067544 caagaccctta 9067554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 31647359 - 31647253
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttag 100  Q
    ||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| |||||| || | | ||||||||||    
T  31647359 aatgataaatttaactttttaaaagtcaaaatgttattgaaatcaatgcaaacatgctacttttggcttccttaaccattgctctga-gacaatggttag 31647261  T
Q  101 caagaccc 108  Q
    ||||||||    
T  31647260 caagaccc 31647253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 29915633 - 29915738
Alignment:
Q  5 ataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaag 104  Q
    |||||||||||||||||||||||||||||| ||| ||| |||||||||||| |||||||||||||||||||||||||  |||||| ||||||||| |||     
T  29915633 ataaatttaactttttaaaagtcaaaatgtggttgaaaccaatgcaaacattctacttttggcttccttaatcattgttctcaggtcaatggttaacaat 29915732  T
Q  105 accctt 110  Q
    ||||||    
T  29915733 accctt 29915738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 29964786 - 29964891
Alignment:
Q  5 ataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaag 104  Q
    |||||||||||||||||||||||||||||| ||| ||| |||||||||||| |||||||||||||||||||||||||  |||||| ||||||||| |||     
T  29964786 ataaatttaactttttaaaagtcaaaatgtggttgaaaccaatgcaaacattctacttttggcttccttaatcattgttctcaggtcaatggttaacaat 29964885  T
Q  105 accctt 110  Q
    ||||||    
T  29964886 accctt 29964891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 32415620 - 32415518
Alignment:
Q  5 ataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaag 104  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| |||||||| ||||| ||| |||||||| |||||||||    
T  32415620 ataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaacatgttacttttggtttccttaaccattg-cctgagggcaatagttagcaag 32415522  T
Q  105 accc 108  Q
    ||||    
T  32415521 accc 32415518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 12905336 - 12905415
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcatt 80  Q
    ||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||    
T  12905336 aatgataaatttaacattttaaaagtcaaaatgttgttgaaaccaatgcaaacatgctactttttgcttccttaatcatt 12905415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 4759906 - 4759978
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||    
T  4759906 tgataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaacatgttacttttggcttccttaa 4759978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 35306385 - 35306303
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccct 85  Q
    |||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||||||||| |||||||| |||||||||    
T  35306385 tgataaatttaactttttaaaagttaaaatgttattgaaatcaatgcaaacatgctacttttggtttccttaagcattgccct 35306303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 8847508 - 8847600
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatg 95  Q
    |||| ||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||||||||| |||||||| ||||||| | |||||||||    
T  8847508 tgattaatttaactttttaaaagttaaaatattgttgaaaacaatgtaaacatgctacttttggtttccttaaccattgccatgagggcaatg 8847600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 52570835 - 52570728
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaac--atgctacttttggcttccttaatcattgccctcagggcaatggttag 100  Q
    |||||||| ||||||||||||||||||||| ||||| ||| ||||||||||  |||||||||||||| ||||||| |||||   | || |||||||||||    
T  52570835 tgataaatataactttttaaaagtcaaaatattgttgaaaccaatgcaaacatatgctacttttggcatccttaaccattg---tgagagcaatggttag 52570739  T
Q  101 caagaccctta 111  Q
    |||||||||||    
T  52570738 caagaccctta 52570728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 44695725 - 44695796
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttcct 72  Q
    |||||||||||||||||||||||| | ||||||||||| ||| ||||||||||||| |||||||||||||||    
T  44695725 aatgataaatttaactttttaaaaattaaaatgttgttgaaatcaatgcaaacatgttacttttggcttcct 44695796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 37509164 - 37509086
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattg 81  Q
    |||||||||||||||||||||||||||||| ||||| ||| ||||||||| ||| |||||||| ||||||||| |||||    
T  37509164 tgataaatttaactttttaaaagtcaaaatattgttgaaaccaatgcaaatatgttacttttgacttccttaaccattg 37509086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 20227436 - 20227514
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattg 81  Q
    ||||||||||||||| |||||||| |||||||| || ||| |||| |||||||| |||||||| |||||||||||||||    
T  20227436 tgataaatttaacttcttaaaagttaaaatgttattgaaaccaatacaaacatgttacttttgacttccttaatcattg 20227514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 37445230 - 37445169
Alignment:
Q  159 aaagagatgattggaacattcagccctcaagcagagccttacacgcatgaaatgccagaaga 220  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||| ||||| |||||||||||    
T  37445230 aaagagatgcttggaactttcagccctcaaccagagccttacacacatgagatgccagaaga 37445169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 45899600 - 45899673
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaat 76  Q
    |||| ||||||| ||||||||||||||||| ||||| ||  ||||| |||||| |||||||||| |||||||||    
T  45899600 tgatgaatttaaatttttaaaagtcaaaatattgttgaattcaatgtaaacatactacttttggtttccttaat 45899673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 41346026 - 41345921
Alignment:
Q  5 ataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaag 104  Q
    |||||||||| ||||||||||| ||||| ||||| ||| |||||||||||   || ||||| ||| ||||| |||| | || | |  |||||||||||||    
T  41346026 ataaatttaattttttaaaagttaaaatattgttgaaaccaatgcaaacaatatatttttgcctttcttaaccattactcttatgataatggttagcaag 41345927  T
Q  105 accctt 110  Q
    ||||||    
T  41345926 accctt 41345921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 25102385 - 25102449
Alignment:
Q  11 ttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    |||| ||||| ||||| ||||| ||||| ||| ||||||||| ||||||||||||| ||||||||    
T  25102385 ttaatttttttaaagttaaaatattgttgaaaccaatgcaaatatgctacttttggtttccttaa 25102449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 20406661 - 20406715
Alignment:
Q  57 ctacttttggcttccttaatcattgccctcagggcaatggttagcaagaccctta 111  Q
    |||||| ||| ||||||||||||||| || |||||| || |||||||||||||||    
T  20406661 ctacttatggattccttaatcattgctcttagggcactgattagcaagaccctta 20406715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 49976197 - 49976235
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaa 41  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  49976197 tgatgaatttaactttttaaaagtcaaaatattgttaaa 49976235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 34060822 - 34060883
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctactttt 64  Q
    |||| ||||||||||||||||||| ||||| ||||| ||  |||||||||||  ||||||||    
T  34060822 tgatgaatttaactttttaaaagttaaaatattgttgaattcaatgcaaacaaactactttt 34060883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 2e-37; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 7875237 - 7875341
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  7875237 tgataaatttaactttttaaaagtcaaaatattgttgaaaccaatgcagacatgctacttttggcttccttaatcattgccccgagggcaatggttagca 7875336  T
Q  103 agacc 107  Q
    |||||    
T  7875337 agacc 7875341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 26572133 - 26572236
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    ||||||||||||  |||||||||| ||||| ||||||||| |||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||    
T  26572133 tgataaatttaatattttaaaagttaaaatattgttaaaaccaatgcaaacatgctacttttgacttccttaaccattgccctgagggcaatggttagca 26572232  T
Q  103 agac 106  Q
    ||||    
T  26572233 agac 26572236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 7880483 - 7880589
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||||||||||||||||||||| ||||| |||  ||| || |||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  7880483 tgataaatttaactttttaaaagtcaaaatattgttgaaactaatacagacatgctacttttggcttccttaatcattgccccgagggtaatggttagca 7880582  T
Q  103 agaccct 109  Q
    |||||||    
T  7880583 agaccct 7880589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 16437642 - 16437740
Alignment:
Q  7 aaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaaga 105  Q
    |||||||||||||||||||| ||||| ||||| ||| |||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| |||||    
T  16437642 aaatttaactttttaaaagtaaaaatattgttgaaaccaatgcaaacatgctactgttggtttccttaaccattgccctcagggcaatggttaacaaga 16437740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 10855485 - 10855381
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||||||||||||||||||||||||||| ||| || |||||| ||||||||||||  ||| |||| ||||||||||||| ||||||||||||    
T  10855485 tgataaatttaactttttaaaagtcaaaatgttgttgaaacca-tgcaaatatgctacttttgatttctttaaccattgccctcaggacaatggttagca 10855387  T
Q  103 agaccc 108  Q
    ||||||    
T  10855386 agaccc 10855381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 12191546 - 12191442
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||| ||||||| || | |||||||| ||||    
T  12191546 tgataaatttaattttttaaaagtcaaaatgttgttgaaatcaatacaaacatgctacttttgccttccttaaccattgccatc-gagcaatggtcagca 12191448  T
Q  103 agaccc 108  Q
    ||||||    
T  12191447 agaccc 12191442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 5578327 - 5578245
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccct 85  Q
    |||||||||||||||||||||||||||||| ||||| |||  ||||||||||||||||||||| ||||||||| |||||||||    
T  5578327 tgataaatttaactttttaaaagtcaaaatattgttgaaacaaatgcaaacatgctacttttgacttccttaaccattgccct 5578245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 32786110 - 32786041
Alignment:
Q  15 ctttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccc 84  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||    
T  32786110 ctttttaaaagtcaaaatgttgttgaaaccaatgcaaacatgctacttttggtttccttaaccattgccc 32786041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 7274270 - 7274349
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgc 82  Q
    ||||||||||||| |||||||||| ||||||||||| ||| |||| |||||||| ||||||||| |||||||||||||||    
T  7274270 tgataaatttaacattttaaaagttaaaatgttgttgaaatcaatacaaacatgttacttttggtttccttaatcattgc 7274349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 6866968 - 6866913
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgct 58  Q
    ||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||    
T  6866968 tgataaatttaaccttttaaaagtcaaaatgttgttgaaatcaatgcaaacatgct 6866913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 8324158 - 8324251
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaat 94  Q
    |||||||||||||||||||||||| | ||||||||||| ||| ||||  ||||||| || ||||  ||||||||| ||||| ||| ||||||||    
T  8324158 aatgataaatttaactttttaaaaattaaaatgttgttgaaaccaatataaacatgttatttttaccttccttaaccattgtcctgagggcaat 8324251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 31220383 - 31220456
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaat 76  Q
    |||| ||||||||||||||||||| |||||||| || || | ||||||||||| |||||||||| |||||||||    
T  31220383 tgatgaatttaactttttaaaagttaaaatgttattgaataaaatgcaaacatactacttttggtttccttaat 31220456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 12175612 - 12175535
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattg 81  Q
    |||||||||||||||||||||||| |||| ||| |||||| |||||||||||| ||||||||   |||||||| |||||    
T  12175612 tgataaatttaactttttaaaagttaaaa-gttattaaaaccaatgcaaacatactacttttaagttccttaaccattg 12175535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 19646009 - 19645945
Alignment:
Q  44 caatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaagaccc 108  Q
    |||||||||  | |||||||| | |||||||| ||||||||| ||| ||||||||||||||||||    
T  19646009 caatgcaaaactactacttttagtttccttaaccattgccctgaggacaatggttagcaagaccc 19645945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 8825073 - 8825035
Alignment:
Q  70 ccttaatcattgccctcagggcaatggttagcaagaccc 108  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  8825073 ccttaaccattgccctcaaggcaatggttagcaagaccc 8825035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 6507449 - 6507550
Alignment:
Q  7 aaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaagac 106  Q
    |||||||||||||||||| ||||||  ||||| ||  ||||| | | || |||||||||  |||||||| ||||| ||| ||||||  ||||||||| ||    
T  6507449 aaatttaactttttaaaaatcaaaacattgttgaattcaatgtatatatactacttttgatttccttaaccattgtcctgagggcaccggttagcaaaac 6507548  T
Q  107 cc 108  Q
    ||    
T  6507549 cc 6507550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 12226392 - 12226489
Alignment:
Q  8 aatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaaga 105  Q
    ||||||||||||| ||||| ||||  ||||| ||  ||||| ||| || ||| |||||| |||||||| ||||| ||| ||||||  |||||||||||    
T  12226392 aatttaactttttgaaagtaaaaacattgttgaattcaatgtaaatatactatttttggtttccttaaccattgtcctgagggcaccggttagcaaga 12226489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 3e-36; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 39567958 - 39567852
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttag 100  Q
    |||||||||||||||||||||||| ||||||  ||||| ||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  39567958 aatgataaatttaactttttaaaaatcaaaacattgttgaaaccaatgcaaacatgctacttttgacttccttaatcattgccctgagggcaatggttag 39567859  T
Q  101 caagacc 107  Q
    |||||||    
T  39567858 caagacc 39567852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 35653311 - 35653416
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||||||||| ||| ||||||||||||| ||| ||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||    
T  35653311 tgataaatttaactttttgaaaatcaaaatgttgttgaaaccaatgcaaacatggtacttttggcttccttaaccattgccctgagggcaatggttagca 35653410  T
Q  103 agaccc 108  Q
    ||||||    
T  35653411 agaccc 35653416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 8410197 - 8410089
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttag 100  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||| | ||||||||| |||     
T  8410197 aatgataaatttaactttttaaaagtcaaaatgttattaaaaccaatacaaacatgctagttttggcttccttaatcattgccttgagggcaatgattaa 8410098  T
Q  101 caagaccct 109  Q
    |||||||||    
T  8410097 caagaccct 8410089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 16315597 - 16315695
Alignment:
Q  12 taactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaagaccctt 110  Q
    ||||||||||| ||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  16315597 taactttttaatagtcaaaatgttgttgaaaccaatgcaaacacgctacttttggcttccttaaccattgccctgagggcaatggttagcaagaccctt 16315695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 5151544 - 5151437
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttag 100  Q
    |||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||| ||||||||| | ||| ||| || |||||||||||    
T  5151544 aatgataaatttaactttttaaaagtcaaaatgttgttgaaactaatgcaaacatgctacttttgccttccttaaccgttgtcctgagagcaatggttag 5151445  T
Q  101 caagaccc 108  Q
     |||||||    
T  5151444 taagaccc 5151437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 34546831 - 34546724
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||| ||||||||||| ||||||||||| |||  |||||||| ||| |||||||||||||||||| ||||||||| |||||||| |||||||    
T  34546831 tgataaatttaattttttaaaagttaaaatgttgttgaaactaatgcaaaaatgatacttttggcttccttaaccattgcccttagggcaatagttagca 34546732  T
Q  103 agaccctt 110  Q
    ||||||||    
T  34546731 agaccctt 34546724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 12914228 - 12914123
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||| ||||||||| ||||||| ||||| ||| |||||||||||| ||||||||||||||||||| |||| |||||||||||||| ||| ||    
T  12914228 tgataaatttaattttttaaaaatcaaaatattgttgaaaccaatgcaaacatactacttttggcttccttaaccattaccctcagggcaatgattatca 12914129  T
Q  103 agaccc 108  Q
    ||||||    
T  12914128 agaccc 12914123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 25017347 - 25017456
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||||||||||||||||||||| | ||| ||| |||| ||||||||||||||||| ||||||||| ||||||  | || |||||||||||||    
T  25017347 tgataaatttaactttttaaaagtcaaaatatcgttgaaaccaatacaaacatgctacttttgacttccttaaccattgctttgagagcaatggttagca 25017446  T
Q  103 agacccttaa 112  Q
    ||||||||||    
T  25017447 agacccttaa 25017456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 4422020 - 4422119
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    ||||||||||||||||||| || ||||||||||||| ||  ||||||||||||| |||||||| ||||||||| |||||||||||| |||||||| ||||    
T  4422020 tgataaatttaactttttacaaatcaaaatgttgttgaagtcaatgcaaacatgttacttttgacttccttaaccattgccctcagtgcaatggtcagca 4422119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 27823312 - 27823203
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccct-cagggcaatggttagc 101  Q
    |||||||||||||||||||||| | |||||||||   ||| |||| ||||||||||| ||||| |||||||||||||||||||  ||||||||||| |||    
T  27823312 tgataaatttaactttttaaaaattaaaatgttg---aaatcaatacaaacatgctaattttgacttccttaatcattgccctggagggcaatggtcagc 27823216  T
Q  102 aagacccttaagt 114  Q
    |||||||||||||    
T  27823215 aagacccttaagt 27823203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 13951292 - 13951373
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccc 84  Q
    |||||||||||  ||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| ||||||||    
T  13951292 tgataaatttatttttttaaaagtcaaaatgttgttgaaaccaatgcaagcatgctacttttggcttccttaaccattgccc 13951373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 4962572 - 4962655
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctc 86  Q
    |||||||||||||||||| ||||||||||||||||| |||  ||| ||||||||||||||||| ||| | ||| ||||||||||    
T  4962572 tgataaatttaacttttttaaagtcaaaatgttgttgaaactaatacaaacatgctacttttgtctttcctaaccattgccctc 4962655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 3639131 - 3639236
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||| ||||||||||||||| | ||||| ||| ||||||||||||  |||||||| ||||||||| ||||  ||| | ||||||||||| ||    
T  3639131 tgataaatttaattttttaaaagtcaaa-tattgttgaaaccaatgcaaacatattacttttgacttccttaaccattatcctgaaggcaatggttaaca 3639229  T
Q  103 agaccct 109  Q
    |||||||    
T  3639230 agaccct 3639236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 28143181 - 28143251
Alignment:
Q  5 ataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    |||||||||||||||||||| ||||||||||||| |||  ||| |||||||||||||||||||||| ||||    
T  28143181 ataaatttaactttttaaaaatcaaaatgttgttgaaactaatacaaacatgctacttttggcttctttaa 28143251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 1759870 - 1759821
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaa 52  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1759870 tgataaatttaactttttaaaagtcaaaatgttgttaaaaccaatgcaaa 1759821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 39693065 - 39692984
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgc 82  Q
    ||||||||||||| |||||||||||| ||||| ||||| ||| |||| |||||||| |||||||| ||||||||| ||||||    
T  39693065 aatgataaatttatctttttaaaagttaaaatattgttgaaatcaatacaaacatgttacttttgacttccttaaccattgc 39692984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 43414118 - 43414182
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttg 65  Q
    |||||| ||||||||||||||||| ||||||||||||| ||| ||||||||||||| ||||||||    
T  43414118 aatgatcaatttaactttttaaaaatcaaaatgttgttgaaaccaatgcaaacatgttacttttg 43414182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 35945299 - 35945197
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    ||||||||||||||||||||| || ||||||||||| |||  |||||||| ||| || ||||||||| ||||| ||||  |||| | |||||||| ||||    
T  35945299 tgataaatttaactttttaaatgttaaaatgttgttgaaactaatgcaaatatgatatttttggctttcttaaccattaacctccgagcaatggtcagca 35945200  T
Q  103 aga 105  Q
    |||    
T  35945199 aga 35945197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 338820 - 338881
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctactttt 64  Q
    |||||||||||||||||||||| ||||||| ||||| |||  ||||||||||||||||||||    
T  338820 tgataaatttaactttttaaaaatcaaaatattgttgaaacaaatgcaaacatgctactttt 338881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 25568348 - 25568428
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgcc 83  Q
    ||||| |||||||||||||||| |||||||||| || ||| ||||||||||||| || |||| | |||||||| |||||||    
T  25568348 tgatacatttaactttttaaaaatcaaaatgttattgaaaccaatgcaaacatgttaattttagtttccttaaccattgcc 25568428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 12068230 - 12068307
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattg 81  Q
    ||||||||||||||||||||||||||||||||| || | | |||| ||||||||||| ||||| ||| ||||| |||||    
T  12068230 tgataaatttaactttttaaaagtcaaaatgttattgacaccaatacaaacatgcta-ttttgactttcttaaccattg 12068307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 10017684 - 10017733
Alignment:
Q  12 taactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctact 61  Q
    ||||||||||||||| ||||||||||||||| |||||||||||| |||||    
T  10017684 taactttttaaaagttaaaatgttgttaaaaccaatgcaaacatactact 10017733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 4838322 - 4838262
Alignment:
Q  15 ctttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    |||||||||||||||||| ||||| |||  |||||||||||| || |||||||||||||||    
T  4838322 ctttttaaaagtcaaaatattgttgaaactaatgcaaacatgttatttttggcttccttaa 4838262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 39042096 - 39042170
Alignment:
Q  8 aatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgc 82  Q
    ||||||| ||||||||||| ||||||||||| |   ||||| |||||||||| |||||||||| |||| ||||||    
T  39042096 aatttaattttttaaaagttaaaatgttgttgatgtcaatgtaaacatgctatttttggcttctttaaccattgc 39042170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 39167645 - 39167560
Alignment:
Q  7 aaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggca 92  Q
    |||||||||||||||||| ||||||  ||||||||  ||||| ||| ||  ||||||||| || ||||| ||||||||| ||||||    
T  39167645 aaatttaactttttaaaaatcaaaacattgttaaattcaatgtaaatatattacttttggttttcttaaccattgccctaagggca 39167560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 1479192 - 1479224
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgtt 35  Q
    |||||||||||||||||||||||||||||||||    
T  1479192 tgataaatttaactttttaaaagtcaaaatgtt 1479224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 37243900 - 37243852
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaa 51  Q
    |||||||||||||||||||||| | ||||||||||| ||| ||||||||    
T  37243900 tgataaatttaactttttaaaaattaaaatgttgttgaaatcaatgcaa 37243852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 39335526 - 39335474
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacat 55  Q
    |||| ||||||||||||||||||||||||||||||| ||  |||| |||||||    
T  39335526 tgatgaatttaactttttaaaagtcaaaatgttgttgaatccaatacaaacat 39335474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 109
Target Start/End: Original strand, 104984 - 105019
Alignment:
Q  74 aatcattgccctcagggcaatggttagcaagaccct 109  Q
    |||||||||||| |||||||||||||||||||||||    
T  104984 aatcattgcccttagggcaatggttagcaagaccct 105019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 16899635 - 16899680
Alignment:
Q  10 tttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacat 55  Q
    ||||||||||||||||||||||||||||| ||  |||| |||||||    
T  16899635 tttaactttttaaaagtcaaaatgttgttgaatccaatacaaacat 16899680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 19894872 - 19894799
Alignment:
Q  2 atgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    ||||| ||||||||||||||||||| ||||| ||||||||  |||| ||||| |  ||||||||  ||||||||    
T  19894872 atgatgaatttaactttttaaaagttaaaatattgttaaatccaattcaaaccttatacttttgatttccttaa 19894799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 2e-33; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 29687529 - 29687424
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||| ||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||  |||||| | ||||||||||||||||    
T  29687529 tgatgaatttaactttttaaaagttaaaatgttgttgaaaccaatgcaaacatgctacttttggcttccttaagtattgccttgagggcaatggttagca 29687430  T
Q  103 agaccc 108  Q
    ||||||    
T  29687429 agaccc 29687424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 1910299 - 1910190
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttag 100  Q
    |||||||||||||||||||||||||| ||||||||||| |||  |||| |||||||||||||||| |||| |||| ||||||||| | ||||||||||||    
T  1910299 aatgataaatttaactttttaaaagttaaaatgttgttgaaacaaatgtaaacatgctacttttgacttctttaaccattgccctgatggcaatggttag 1910200  T
Q  101 caagaccctt 110  Q
    ||||||||||    
T  1910199 caagaccctt 1910190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 7323009 - 7323114
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| |||| |||| |||||| |||||| ||||| ||||||    
T  7323009 tgataaatttaattttttaaaagtcaaaatgttgttgaaaccaatgcaaacatgctacttttgacttctttaaccattgctctcaggacaatgattagca 7323108  T
Q  103 agaccc 108  Q
    ||||||    
T  7323109 agaccc 7323114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 8292796 - 8292689
Alignment:
Q  5 ataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaag 104  Q
    ||||||||  |||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||| ||||||||||| | |||||||||||||     
T  8292796 ataaatttgcctttttaaaagtcaaaatgttgttgaaatcaatccaaacatgctacttttgacttccttaaccattgccctcacgacaatggttagcaaa 8292697  T
Q  105 acccttaa 112  Q
    ||||||||    
T  8292696 acccttaa 8292689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 5240388 - 5240493
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    ||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| ||||| | | | |||| ||||||||     
T  5240388 tgataaatttaactttttaaaagtcaaaatgttattgaaaccaatgcaaacatgctacttttggcttccttaaccattgtcttaaaggcattggttagcg 5240487  T
Q  103 agaccc 108  Q
    ||||||    
T  5240488 agaccc 5240493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 8380494 - 8380411
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctc 86  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||| |||||| ||||||||||||||||||| ||||||||||    
T  8380494 tgataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgaaaacatactacttttggcttccttaaccattgccctc 8380411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 29034740 - 29034658
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccct 85  Q
    |||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||| ||||| |||||||||    
T  29034740 tgataaatttaactttttaaaagtcaaaatgttgttgaaactaatgcaaacatgctacttttggctttcttaaccattgccct 29034658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 8258694 - 8258799
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||||||||||| ||||| ||| ||||| ||| |||||||||||| ||||||||| ||||  |||||||||| || ||||||||||||||||    
T  8258694 tgataaatttaactttttaatagtcataattttgttgaaaccaatgcaaacatactacttttgccttcaataatcattgcactaagggcaatggttagca 8258793  T
Q  103 agaccc 108  Q
    ||||||    
T  8258794 agaccc 8258799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 24359765 - 24359836
Alignment:
Q  4 gataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    ||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  24359765 gataaatttaactttttaaaagttaaaatgttgttgaaaccaatgcaaacatgctacttttggcttccttaa 24359836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 27053549 - 27053666
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatca--------ttgccctcagggcaat 94  Q
    |||||||||||||||||||||||||||||| ||||| ||| |||||||||||| |||||||||| |||||||| ||        || |||| ||||||||    
T  27053549 tgataaatttaactttttaaaagtcaaaatattgttgaaaccaatgcaaacattctacttttggtttccttaaccacattgcccttaccctgagggcaat 27053648  T
Q  95 ggttagcaagacccttaa 112  Q
    ||||||||||||||||||    
T  27053649 ggttagcaagacccttaa 27053666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 41188842 - 41188926
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctca 87  Q
    ||||||||||||||||||||||||||||||| |||| ||| |||||||||||| |||| |||||||||||||| ||||| |||||    
T  41188842 tgataaatttaactttttaaaagtcaaaatgctgttgaaatcaatgcaaacatactacatttggcttccttaaccattgtcctca 41188926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 5348028 - 5348097
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    ||||||||||||||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||    
T  5348028 tgataaatttaactttttaaaagtcaaaatgttg---aaaccaatgcaaacatgctacttttggcttccttaa 5348097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 22521639 - 22521561
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattg 81  Q
    ||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| ||| ||||| |||||    
T  22521639 tgataaatttaacttcttaaaagtcaaaatgttgttgaaaccaatgcaaacatgctacttttgactttcttaaccattg 22521561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 42222274 - 42222190
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctca 87  Q
    |||||||||||||||||||||||||||||| ||||| ||| |||| |||||||| ||||||| | |||||||| |||||||||||    
T  42222274 tgataaatttaactttttaaaagtcaaaatattgttgaaaccaatacaaacatgttacttttagtttccttaaccattgccctca 42222190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 36279172 - 36279067
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||||||||||||| |||||||||||   |||  ||||||||||||||||||||| ||| ||||| ||||||||   |||||||||||| ||    
T  36279172 tgataaatttaactttttaaaaatcaaaatgttg---aaattaatgcaaacatgctacttttgcctttcttaaccattgccc---gggcaatggttaaca 36279079  T
Q  103 agacccttaagt 114  Q
    |||||| |||||    
T  36279078 agacccataagt 36279067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 40194879 - 40194818
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctactttt 64  Q
    |||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  40194879 tgataaatttaattttttaaaagtcaaaatgttgttgaaaccaatgcaaacatgctactttt 40194818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 43567562 - 43567623
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctactttt 64  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||    
T  43567562 tgataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaacatgatactttt 43567623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 3681747 - 3681643
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||||||||||||||||||| ||||||||||| ||| |||||| ||||||  ||  ||| |||| |||| ||||| ||  ||||||||||||||||    
T  3681747 tgataaatttaactttttaaaagttaaaatgttgttgaaaccaatgc-aacatgtcacggttgacttctttaaccattggccaaagggcaatggttagca 3681649  T
Q  103 agaccc 108  Q
    ||||||    
T  3681648 agaccc 3681643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 29959097 - 29959024
Alignment:
Q  26 tcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggtta 99  Q
    ||||||||||||| ||| ||||||||||||  ||||||||| |||||||||||||| |||||| ||||||||||    
T  29959097 tcaaaatgttgttgaaaccaatgcaaacataatacttttggtttccttaatcattgtcctcagagcaatggtta 29959024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 40763302 - 40763241
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctactttt 64  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||||||| |||||||||||    
T  40763302 tgataaatttaactttttaaaagttaaaatgttgttgaaaccaatgcaaatatgctactttt 40763241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 46478609 - 46478694
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctc 86  Q
    |||||||||||||||||||||||||| ||||| ||||| |||  |||||||| ||| ||||||||||||| |||| ||||| ||||    
T  46478609 aatgataaatttaactttttaaaagttaaaatattgttgaaactaatgcaaatatgttacttttggcttcgttaaccattgtcctc 46478694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 30388714 - 30388793
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcatt 80  Q
    |||||||||||||||||||||||||||||||| || || ||| ||||  |||||| ||||||||| |||| |||| ||||    
T  30388714 aatgataaatttaactttttaaaagtcaaaatattattgaaatcaatataaacatactacttttgacttctttaaccatt 30388793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 30538534 - 30538596
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttgg 66  Q
    |||||||||||||||||||||||| |||||||||||   ||| ||||||||||||| |||||||||    
T  30538534 aatgataaatttaactttttaaaaatcaaaatgttg---aaatcaatgcaaacatgttacttttgg 30538596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 31626097 - 31626147
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaac 53  Q
    |||||||||||||||||||||| ||||||||||||| ||| ||||||||||    
T  31626097 tgataaatttaactttttaaaaatcaaaatgttgttgaaaccaatgcaaac 31626147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 40066971 - 40067043
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    |||||||||||||||||||||||| | ||||||||||||||| |||| |||| || ||||||||| |||||||||    
T  40066971 aatgataaatttaactttttaaaaat-aaaatgttgttaaaaccaatacaaa-atactacttttgccttccttaa 40067043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 49069608 - 49069502
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagca 102  Q
    |||||||| ||||||||||||| |||| || ||||| ||| |||| |||||||| ||||||||| |||||||| ||||   || ||| || |||||||||    
T  49069608 tgataaatctaactttttaaaaatcaatatattgttgaaaccaatacaaacatgttacttttggtttccttaaccattattctgaggacactggttagca 49069509  T
Q  103 agaccct 109  Q
    | |||||    
T  49069508 aaaccct 49069502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 46042799 - 46042695
Alignment:
Q  5 ataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaag 104  Q
    |||||||||||||||| |||||| |||||||||| ||| |||||||||||| |||  ||| | || ||||||||||||| | ||  || ||||||| |||    
T  46042799 ataaatttaacttttttaaagtctaaatgttgttgaaaccaatgcaaacatactatatttag-tttcttaatcattgccttaagatcattggttagtaag 46042701  T
Q  105 accctt 110  Q
    ||||||    
T  46042700 accctt 46042695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 22707104 - 22707049
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatg 56  Q
    |||||||||||| ||||||||||||| || |||||||| ||| |||||||||||||    
T  22707104 aatgataaattttactttttaaaagttaacatgttgttgaaaccaatgcaaacatg 22707049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 43958137 - 43958200
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctactttt 64  Q
    |||||||||||||| ||||||||||||||||| ||  | ||| ||||||||||||| |||||||    
T  43958137 aatgataaatttaattttttaaaagtcaaaatattactgaaaccaatgcaaacatgttactttt 43958200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 16492144 - 16492182
Alignment:
Q  70 ccttaatcattgccctcagggcaatggttagcaagaccc 108  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  16492144 ccttaatcattgccctaagggcaatggttagcaagaccc 16492182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 16957711 - 16957614
Alignment:
Q  10 tttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaagaccc 108  Q
    ||||||||||||||||||||||| ||||| ||   |||| ||| ||  ||||||||| |||||||| ||||||| | ||||||  ||||||||||||||    
T  16957711 tttaactttttaaaagtcaaaatattgttgaatttaatgtaaatatattacttttgg-ttccttaaccattgccatgagggcaccggttagcaagaccc 16957614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 42552535 - 42552589
Alignment:
Q  11 ttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttg 65  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||  ||||||||    
T  42552535 ttaactttttaaaagtcaaaatattgttaaattcaatgcaaacatattacttttg 42552589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 10575819 - 10575919
Alignment:
Q  7 aaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaagac 106  Q
    |||||||||||||||||| || |||| ||||| ||  ||||| ||| || |||||||||  ||| |||| ||||||||  |||||| |||| ||||||||    
T  10575819 aaatttaactttttaaaactccaaatattgttgaattcaatgaaaatatactacttttgatttctttaaccattgccccgagggcactggtgagcaagac 10575918  T
Q  107 c 107  Q
    |    
T  10575919 c 10575919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 44260556 - 44260630
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    |||||| ||||||| |||||||||| ||||||||| || ||   ||||||||||| ||| |||||| ||||||||    
T  44260556 aatgatgaatttaattttttaaaagccaaaatgttattgaatttaatgcaaacatactaattttggtttccttaa 44260630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 34835912 - 34835839
Alignment:
Q  8 aatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattg 81  Q
    ||||||||||||||||||| ||||| ||||||||  ||||  ||| || ||||||||   ||||||||||||||    
T  34835912 aatttaactttttaaaagttaaaatattgttaaattcaatataaatatactacttttaatttccttaatcattg 34835839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 48454878 - 48454907
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaat 32  Q
    ||||||||||||||||||||||||||||||    
T  48454878 tgataaatttaactttttaaaagtcaaaat 48454907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 6e-31; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 4989988 - 4989884
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttag 100  Q
    ||||||||||||||||||||||| ||||||||||||   ||| |||||||||||||||||||||| ||||||||| ||||||| | ||||||||||||||    
T  4989988 aatgataaatttaactttttaaatgtcaaaatgttg---aaaccaatgcaaacatgctacttttgacttccttaaccattgccatgagggcaatggttag 4989892  T
Q  101 caagaccc 108  Q
    ||||||||    
T  4989891 caagaccc 4989884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 6433595 - 6433492
Alignment:
Q  5 ataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaag 104  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||||||| || ||||||||| ||||||||| |||||| || ||||||||| ||||| ||    
T  6433595 ataaatttaactttttaaaagttaaaatattgttaaaaccaatgcaaagatactacttttgtcttccttaaccattgctctgagggcaatgattagcgag 6433496  T
Q  105 accc 108  Q
    ||||    
T  6433495 accc 6433492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 10694860 - 10694781
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgc 82  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||| ||| |||||||||||||||||| ||||||    
T  10694860 tgataaatttaactttttaaaagtcaaaatgttgttgaaatcaatgcaaatatgatacttttggcttccttaaccattgc 10694781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 26672842 - 26672735
Alignment:
Q  4 gataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaa 103  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||  ||||||  || |||||  |||||||| ||||||||||||||||||| |||||||    
T  26672842 gataaatttaattttttaaaagtcaaaatgttgttgaaaccaatataaacatcgtatttttgatttccttaaccattgccctcagggcaatgattagcaa 26672743  T
Q  104 gaccctta 111  Q
    ||||||||    
T  26672742 gaccctta 26672735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 3174511 - 3174402
Alignment:
Q  5 ataaatttaactttttaaaagtcaaaat----gttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttag 100  Q
    |||||||| |||||||||||||||||||    |||||| ||| |||| |||||||||||||||||||||||||||   ||||| | ||||||||||||||    
T  3174511 ataaatttgactttttaaaagtcaaaataaatgttgttgaaaccaatacaaacatgctacttttggcttccttaactgttgccatgagggcaatggttag 3174412  T
Q  101 caagaccctt 110  Q
    ||||||||||    
T  3174411 caagaccctt 3174402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 8018814 - 8018733
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgc-aaacatgctacttttggcttccttaatcattgcc 83  Q
    |||||||||||||||||||||| |||||||||||||||||  ||||| |||||| ||||||||||||||||||| |||||||    
T  8018814 tgataaatttaactttttaaaaatcaaaatgttgttaaaactaatgcaaaacatactacttttggcttccttaaccattgcc 8018733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 19389366 - 19389438
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    |||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||  ||||||||    
T  19389366 tgataaatttaactttttaaaagtcaaaatatcgttgaaaacaatgcaaacatgctacttttgatttccttaa 19389438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 21016113 - 21016185
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    ||||| |||||||||||||||||||||||||||||| ||  |||||||||||||||||||||| |||||||||    
T  21016113 tgatagatttaactttttaaaagtcaaaatgttgttgaagccaatgcaaacatgctacttttgacttccttaa 21016185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 14855441 - 14855512
Alignment:
Q  4 gataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    |||||||||||| |||||||||| |||||||||||||||  |||||||||||||||||||||| ||||||||    
T  14855441 gataaatttaacattttaaaagttaaaatgttgttaaaactaatgcaaacatgctacttttggtttccttaa 14855512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 34713977 - 34714048
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttcctta 74  Q
    |||||||||| |||| |||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||    
T  34713977 tgataaatttcacttcttaaaagtcaaaatgttgttgaaaccaatgcaaacatgctacttttgacttcctta 34714048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 37433318 - 37433239
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgcc 83  Q
    ||||||||||||||||||||| || ||||||||||| ||| |||||||||||| ||||||||  |||||||||||||||||    
T  37433318 tgataaatttaactttttaaa-gttaaaatgttgttgaaaccaatgcaaacatactacttttaacttccttaatcattgcc 37433239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 6939211 - 6939152
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctactt 62  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||    
T  6939211 tgataaatttaactttttaaaagtcaaaatgttgttgaaaccaatgcaaacatgttactt 6939152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 33741528 - 33741619
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggca 92  Q
    |||||||||||||||||||||||||| ||||| ||||| ||| ||||||||| ||| |||||||| ||  |||||||||||| || ||||||    
T  33741528 aatgataaatttaactttttaaaagttaaaatattgttgaaaccaatgcaaatatgttacttttgactctcttaatcattgcactgagggca 33741619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 45338059 - 45337985
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    |||||||||||||||||||||||| |||||||||| || | | |||||||||||| |||||||||| ||||||||    
T  45338059 aatgataaatttaactttttaaaaatcaaaatgttattgagaccaatgcaaacatactacttttggtttccttaa 45337985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 26195429 - 26195490
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctactttt 64  Q
    |||||||||||||||||||||||| ||||||||||| ||| |||| ||||||||||||||||    
T  26195429 tgataaatttaactttttaaaagttaaaatgttgttgaaaccaatacaaacatgctactttt 26195490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 25249397 - 25249453
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgcta 59  Q
    |||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||    
T  25249397 tgataaatttaactttttaaaagtcaaaatattgttgaaaccaatgcaaacatgcta 25249453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 18069015 - 18068951
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggc 67  Q
    ||||||||||||||||||||| |||||||||||||| |||  |||||||||||  ||||||||||    
T  18069015 tgataaatttaactttttaaaggtcaaaatgttgttgaaactaatgcaaacattatacttttggc 18068951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 21016287 - 21016233
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgc 57  Q
    ||||| |||||||||||||||||||||||||||||| ||  ||||||||||||||    
T  21016287 tgatagatttaactttttaaaagtcaaaatgttgttgaagccaatgcaaacatgc 21016233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 11295518 - 11295625
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttag 100  Q
    |||||| ||||||||||||||||||||||||   |||| ||  ||||  ||| || ||| |||||| |||||||| ||||| | | |||||| |||||||    
T  11295518 aatgatgaatttaactttttaaaagtcaaaacaatgttgaattcaatataaatatactaattttggtttccttaaccattgtcatgagggcactggttag 11295617  T
Q  101 caagaccc 108  Q
    ||||||||    
T  11295618 caagaccc 11295625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 5129512 - 5129600
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaa------aaacaatgcaaacatgctacttttggcttccttaatcattgccct 85  Q
    |||||||||||| ||||||||||||||||||||| |||      || |||| |||| ||||||||||||  |||||||||||| |||||    
T  5129512 tgataaatttaattttttaaaagtcaaaatgttgataaaatgttaaccaatacaaatatgctacttttgaattccttaatcatcgccct 5129600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 44874356 - 44874281
Alignment:
Q  33 gttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaagacccttaa 112  Q
    |||||| ||| |||||||||||||||||||||| ||||||||| |||||   ||| ||||||||||||||  ||||||||    
T  44874356 gttgttgaaaccaatgcaaacatgctacttttgtcttccttaaccattg---tca-ggcaatggttagcagaacccttaa 44874281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 38870052 - 38869948
Alignment:
Q  8 aatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaagacc 107  Q
    |||| ||| |||||||||||||||| ||| | ||  ||||| ||| || |||||||||| |||||| | |||||| || |||||| ||||||| || |||    
T  38870052 aattcaacattttaaaagtcaaaatattgatgaattcaatgtaaatatactacttttggtttccttgaccattgctctgagggcactggttagtaaaacc 38869953  T
Q  108 cttaa 112  Q
    |||||    
T  38869952 cttaa 38869948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 5300263 - 5300204
Alignment:
Q  16 tttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    ||||||||||||||||| ||||| ||  |||||||||| | |||||||||| ||||||||    
T  5300263 tttttaaaagtcaaaatattgttgaattcaatgcaaacttactacttttggtttccttaa 5300204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 108
Target Start/End: Original strand, 27982417 - 27982456
Alignment:
Q  69 tccttaatcattgccctcagggcaatggttagcaagaccc 108  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  27982417 tccttaatcattgcccttagggcactggttagcaagaccc 27982456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 108
Target Start/End: Original strand, 28039719 - 28039758
Alignment:
Q  69 tccttaatcattgccctcagggcaatggttagcaagaccc 108  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  28039719 tccttaatcattgcccttagggcactggttagcaagaccc 28039758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 24066963 - 24066897
Alignment:
Q  44 caatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaagaccctt 110  Q
    |||||||||  |||||||||| | |||||||| |||||| || |||||| | |||||||||||||||    
T  24066963 caatgcaaaactgctacttttagtttccttaaccattgctctgagggcagtagttagcaagaccctt 24066897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 64; Significance: 2e-27; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 16825 - 16908
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccc 84  Q
    |||||||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| ||||||||    
T  16825 aatgataaatgtaactttttaaaagtcaaaatattgttgaaaccaatgcaaacatgctacttttggcttccttaaccattgccc 16908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 26993 - 27076
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccc 84  Q
    |||||||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| ||||||||    
T  26993 aatgataaatgtaactttttaaaagtcaaaatattgttgaaaccaatgcaaacatgctacttttggcttccttaaccattgccc 27076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 37159 - 37242
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccc 84  Q
    |||||||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| ||||||||    
T  37159 aatgataaatgtaactttttaaaagtcaaaatattgttgaaaccaatgcaaacatgctacttttggcttccttaaccattgccc 37242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 392188 - 392260
Alignment:
Q  3 tgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| ||||||||||    
T  392188 tgataaatttaactttttaaaagtcaaaatgttgttgaaaccgatgcaaacatgctacttttcgcttccttaa 392260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 4705 - 4764
Alignment:
Q  6 taaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttg 65  Q
    |||||||||||||||||||||||| |||||||| |||  |||||||||||||||||||||    
T  4705 taaatttaactttttaaaagtcaatatgttgttgaaattaatgcaaacatgctacttttg 4764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 39635 - 39534
Alignment:
Q  8 aatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaatcattgccctcagggcaatggttagcaagacc 107  Q
    |||||||||||||||||||||| ||  |||| ||  ||||| ||| || |||||||||| |||||||| ||||||||| |||||   |||||||||||||    
T  39635 aatttaactttttaaaagtcaacat--tgttgaattcaatgtaaatatactacttttggtttccttaaccattgccctgagggcttcggttagcaagacc 39538  T
Q  108 ctta 111  Q
    ||||    
T  39537 ctta 39534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 37433 - 37506
Alignment:
Q  1 aatgataaatttaactttttaaaagtcaaaatgttgttaaaaacaatgcaaacatgctacttttggcttccttaa 75  Q
    |||||| |||||||||||| ||||||||||||||| || ||  |||||| ||||| |||||||||  ||||||||    
T  37433 aatgatgaatttaacttttcaaaagtcaaaatgttattgaatccaatgc-aacattctacttttgatttccttaa 37506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University